STRINGSTRING
AFY18354.1 AFY18354.1 AFY18355.1 AFY18355.1 AFY20338.1 AFY20338.1 AFY22124.1 AFY22124.1 proS1 proS1 AFY18352.1 AFY18352.1 nagZ nagZ AFY18356.1 AFY18356.1 dacB dacB pvdG pvdG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY18354.1[GEPR] COG0477 Permeases of the major facilitator superfamily. (519 aa)    
Predicted Functional Partners:
AFY18355.1
methylated-DNA-(protein)-cysteine S-methyltransferase; [L] COG3695 Predicted methylated DNA-protein cysteine methyltransferase.
       0.688
AFY20338.1
Phosphotransferase family protein; [R] COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases.
 
   
 0.604
AFY22124.1
[R] COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases.
 
   
 0.588
proS1
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
       0.560
AFY18352.1
Putative lipoprotein.
       0.536
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
 
   
 0.532
AFY18356.1
Hypothetical protein.
       0.518
dacB
[M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4).
 
   
 0.444
pvdG
Thioesterase; [Q] COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis.
  
  
 0.441
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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