STRINGSTRING
AFY18368.1 AFY18368.1 secA1 secA1 AFY18370.1 AFY18370.1 AFY18369.1 AFY18369.1 AFY17954.1 AFY17954.1 oprD4 oprD4 AFY20853.1 AFY20853.1 mucB mucB oprD5 oprD5 AFY20935.1 AFY20935.1 AFY18813.1 AFY18813.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY18368.1Hypothetical protein. (164 aa)    
Predicted Functional Partners:
secA1
[U] COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase).
       0.807
AFY18370.1
Hypothetical protein.
 
     0.766
AFY18369.1
[S] COG3012 Uncharacterized protein conserved in bacteria; Belongs to the UPF0225 family.
       0.613
AFY17954.1
Hypothetical protein; [S] COG3471 Predicted periplasmic/secreted protein.
  
     0.530
oprD4
Outer membrane porin.
  
     0.509
AFY20853.1
Hypothetical protein.
  
     0.503
mucB
Sigma factor algU regulatory protein MucB; [T] COG3026 Negative regulator of sigma E activity.
  
     0.496
oprD5
Outer membrane porin.
  
     0.490
AFY20935.1
Hypothetical protein.
  
     0.479
AFY18813.1
Peptidase; [S] COG3212 Predicted membrane protein.
  
     0.468
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.