STRINGSTRING
AFY18370.1 AFY18370.1 AFY18369.1 AFY18369.1 AFY18368.1 AFY18368.1 algX algX algG algG AFY21352.1 AFY21352.1 AFY20712.1 AFY20712.1 algK algK algL algL algJ algJ AFY18377.1 AFY18377.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY18370.1Hypothetical protein. (165 aa)    
Predicted Functional Partners:
AFY18369.1
[S] COG3012 Uncharacterized protein conserved in bacteria; Belongs to the UPF0225 family.
  
    0.816
AFY18368.1
Hypothetical protein.
 
     0.766
algX
Alginate biosynthesis protein AlgX.
  
     0.764
algG
Alginate biosynthesis protein AlgG.
  
     0.762
AFY21352.1
Arc-like DNA binding protein.
  
     0.760
AFY20712.1
Hypothetical protein.
  
     0.745
algK
Alginate biosynthesis protein AlgK; [R] COG0790 FOG: TPR repeat, SEL1 subfamily.
  
     0.745
algL
Alginate lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism; Belongs to the polysaccharide lyase 5 family.
  
     0.729
algJ
Alginate biosynthesis protein AlgJ.
  
     0.720
AFY18377.1
Beta-agarase.
  
     0.716
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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