AFY18374.1 protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AFY18374.1

Hypothetical protein. (252 aa)

Predicted Functional Partners:

AFY18373.1

0.851

AFY21266.1

0.699

AFY21264.1

0.662

AFY21265.1

0.545

AFY20934.1

0.525

AFY19112.1

0.513

AFY20015.1

0.498

AFY18372.1

0.495

AFY18370.1

0.491

AFY18371.1

0.444

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY18370.1	AFY18371.1	PputUW4_01163	PputUW4_01164	Hypothetical protein.	OmpA/MotB domain-containing protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.	0.545
AFY18370.1	AFY18374.1	PputUW4_01163	PputUW4_01167	Hypothetical protein.	Hypothetical protein.	0.491
AFY18371.1	AFY18370.1	PputUW4_01164	PputUW4_01163	OmpA/MotB domain-containing protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.	Hypothetical protein.	0.545
AFY18371.1	AFY18372.1	PputUW4_01164	PputUW4_01165	OmpA/MotB domain-containing protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.	OmpA/MotB domain-containing protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.	0.595
AFY18371.1	AFY18374.1	PputUW4_01164	PputUW4_01167	OmpA/MotB domain-containing protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.	Hypothetical protein.	0.444
AFY18372.1	AFY18371.1	PputUW4_01165	PputUW4_01164	OmpA/MotB domain-containing protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.	OmpA/MotB domain-containing protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.	0.595
AFY18372.1	AFY18373.1	PputUW4_01165	PputUW4_01166	OmpA/MotB domain-containing protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.	[S] COG3776 Predicted membrane protein.	0.495
AFY18372.1	AFY18374.1	PputUW4_01165	PputUW4_01167	OmpA/MotB domain-containing protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.	Hypothetical protein.	0.495
AFY18373.1	AFY18372.1	PputUW4_01166	PputUW4_01165	[S] COG3776 Predicted membrane protein.	OmpA/MotB domain-containing protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.	0.495
AFY18373.1	AFY18374.1	PputUW4_01166	PputUW4_01167	[S] COG3776 Predicted membrane protein.	Hypothetical protein.	0.851
AFY18374.1	AFY18370.1	PputUW4_01167	PputUW4_01163	Hypothetical protein.	Hypothetical protein.	0.491
AFY18374.1	AFY18371.1	PputUW4_01167	PputUW4_01164	Hypothetical protein.	OmpA/MotB domain-containing protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.	0.444
AFY18374.1	AFY18372.1	PputUW4_01167	PputUW4_01165	Hypothetical protein.	OmpA/MotB domain-containing protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.	0.495
AFY18374.1	AFY18373.1	PputUW4_01167	PputUW4_01166	Hypothetical protein.	[S] COG3776 Predicted membrane protein.	0.851
AFY18374.1	AFY19112.1	PputUW4_01167	PputUW4_01907	Hypothetical protein.	[K] COG1309 Transcriptional regulator.	0.513
AFY18374.1	AFY20015.1	PputUW4_01167	PputUW4_02820	Hypothetical protein.	Alpha-2 type XI collagen.	0.498
AFY18374.1	AFY20934.1	PputUW4_01167	PputUW4_03742	Hypothetical protein.	Hypothetical protein.	0.525
AFY18374.1	AFY21264.1	PputUW4_01167	PputUW4_04072	Hypothetical protein.	TadE Family Protein.	0.662
AFY18374.1	AFY21265.1	PputUW4_01167	PputUW4_04073	Hypothetical protein.	TadE Family Protein.	0.545
AFY18374.1	AFY21266.1	PputUW4_01167	PputUW4_04074	Hypothetical protein.	Hypothetical protein.	0.699