STRINGSTRING
AFY18437.1 AFY18437.1 AFY18436.1 AFY18436.1 AFY18435.1 AFY18435.1 AFY18438.1 AFY18438.1 AFY18439.1 AFY18439.1 AFY21514.1 AFY21514.1 AFY22303.1 AFY22303.1 sleB sleB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY18437.1[S] COG3762 Predicted membrane protein. (205 aa)    
Predicted Functional Partners:
AFY18436.1
Hypothetical protein; [R] COG1512 Beta-propeller domains of methanol dehydrogenase type.
 
     0.934
AFY18435.1
LemA family protein; [S] COG1704 Uncharacterized conserved protein.
 
     0.908
AFY18438.1
LuxR family transcriptional regulator; [K] COG2771 DNA-binding HTH domain-containing proteins.
       0.504
AFY18439.1
Hypothetical protein.
       0.504
AFY21514.1
Hypothetical protein; [S] COG0392 Predicted integral membrane protein.
  
     0.482
AFY22303.1
TM2 domain protein; [S] COG2314 Predicted membrane protein.
  
     0.422
sleB
[M] COG3773 Cell wall hydrolyses involved in spore germination.
  
     0.405
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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