Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY18502.1 | AFY20036.1 | PputUW4_01296 | PputUW4_02841 | [E] COG0174 Glutamine synthetase. | [E] COG2902 NAD-specific glutamate dehydrogenase. | 0.906 |
AFY18502.1 | arcC | PputUW4_01296 | PputUW4_04277 | [E] COG0174 Glutamine synthetase. | [E] COG0549 Carbamate kinase; Belongs to the carbamate kinase family. | 0.906 |
AFY18502.1 | carA | PputUW4_01296 | PputUW4_00693 | [E] COG0174 Glutamine synthetase. | [E] COG0505 Carbamoylphosphate synthase small subunit; Belongs to the CarA family. | 0.914 |
AFY18502.1 | carB | PputUW4_01296 | PputUW4_00694 | [E] COG0174 Glutamine synthetase. | [E] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); Belongs to the CarB family. | 0.912 |
AFY18502.1 | glmS | PputUW4_01296 | PputUW4_05423 | [E] COG0174 Glutamine synthetase. | Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.918 |
AFY18502.1 | gltB | PputUW4_01296 | PputUW4_00352 | [E] COG0174 Glutamine synthetase. | [E] COG0069 Glutamate synthase domain 2. | 0.966 |
AFY18502.1 | gltD1 | PputUW4_01296 | PputUW4_00353 | [E] COG0174 Glutamine synthetase. | [ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases. | 0.913 |
AFY18502.1 | nasD | PputUW4_01296 | PputUW4_03642 | [E] COG0174 Glutamine synthetase. | Assimilatory nitrite reductase large subunit; [C] COG1251 NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.907 |
AFY18502.1 | purF | PputUW4_01296 | PputUW4_03437 | [E] COG0174 Glutamine synthetase. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.908 |
AFY18502.1 | putA | PputUW4_01296 | PputUW4_00387 | [E] COG0174 Glutamine synthetase. | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.938 |
AFY20036.1 | AFY18502.1 | PputUW4_02841 | PputUW4_01296 | [E] COG2902 NAD-specific glutamate dehydrogenase. | [E] COG0174 Glutamine synthetase. | 0.906 |
AFY20036.1 | arcC | PputUW4_02841 | PputUW4_04277 | [E] COG2902 NAD-specific glutamate dehydrogenase. | [E] COG0549 Carbamate kinase; Belongs to the carbamate kinase family. | 0.900 |
AFY20036.1 | gltB | PputUW4_02841 | PputUW4_00352 | [E] COG2902 NAD-specific glutamate dehydrogenase. | [E] COG0069 Glutamate synthase domain 2. | 0.944 |
AFY20036.1 | gltD1 | PputUW4_02841 | PputUW4_00353 | [E] COG2902 NAD-specific glutamate dehydrogenase. | [ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases. | 0.909 |
AFY20036.1 | nasD | PputUW4_02841 | PputUW4_03642 | [E] COG2902 NAD-specific glutamate dehydrogenase. | Assimilatory nitrite reductase large subunit; [C] COG1251 NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.907 |
AFY20036.1 | putA | PputUW4_02841 | PputUW4_00387 | [E] COG2902 NAD-specific glutamate dehydrogenase. | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.933 |
arcC | AFY18502.1 | PputUW4_04277 | PputUW4_01296 | [E] COG0549 Carbamate kinase; Belongs to the carbamate kinase family. | [E] COG0174 Glutamine synthetase. | 0.906 |
arcC | AFY20036.1 | PputUW4_04277 | PputUW4_02841 | [E] COG0549 Carbamate kinase; Belongs to the carbamate kinase family. | [E] COG2902 NAD-specific glutamate dehydrogenase. | 0.900 |
arcC | carA | PputUW4_04277 | PputUW4_00693 | [E] COG0549 Carbamate kinase; Belongs to the carbamate kinase family. | [E] COG0505 Carbamoylphosphate synthase small subunit; Belongs to the CarA family. | 0.811 |
arcC | carB | PputUW4_04277 | PputUW4_00694 | [E] COG0549 Carbamate kinase; Belongs to the carbamate kinase family. | [E] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); Belongs to the CarB family. | 0.810 |
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