node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY18506.1 | rnd | PputUW4_01300 | PputUW4_01299 | [S] COG3100 Uncharacterized protein conserved in bacteria. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.911 |
hrpA | rnd | PputUW4_03988 | PputUW4_01299 | [L] COG1643 HrpA-like helicases. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.853 |
hrpA | rph | PputUW4_03988 | PputUW4_05332 | [L] COG1643 HrpA-like helicases. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.670 |
hrpA | rpsA | PputUW4_03988 | PputUW4_01364 | [L] COG1643 HrpA-like helicases. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.879 |
hrpA | rpsD | PputUW4_03988 | PputUW4_04860 | [L] COG1643 HrpA-like helicases. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.851 |
hrpA | rpsE | PputUW4_03988 | PputUW4_04867 | [L] COG1643 HrpA-like helicases. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.737 |
hrpA | rpsK | PputUW4_03988 | PputUW4_04861 | [L] COG1643 HrpA-like helicases. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.828 |
hrpB | rnd | PputUW4_04748 | PputUW4_01299 | ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.867 |
hrpB | rph | PputUW4_04748 | PputUW4_05332 | ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.670 |
hrpB | rpsA | PputUW4_04748 | PputUW4_01364 | ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.879 |
hrpB | rpsD | PputUW4_04748 | PputUW4_04860 | ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.851 |
hrpB | rpsE | PputUW4_04748 | PputUW4_04867 | ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.737 |
hrpB | rpsK | PputUW4_04748 | PputUW4_04861 | ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.828 |
rnd | AFY18506.1 | PputUW4_01299 | PputUW4_01300 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | [S] COG3100 Uncharacterized protein conserved in bacteria. | 0.911 |
rnd | hrpA | PputUW4_01299 | PputUW4_03988 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | [L] COG1643 HrpA-like helicases. | 0.853 |
rnd | hrpB | PputUW4_01299 | PputUW4_04748 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | ATP-dependent helicase HrpB; [L] COG1643 HrpA-like helicases. | 0.867 |
rnd | rnr | PputUW4_01299 | PputUW4_00461 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.858 |
rnd | rph | PputUW4_01299 | PputUW4_05332 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.971 |
rnd | rplW | PputUW4_01299 | PputUW4_04882 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.751 |
rnd | rpsA | PputUW4_01299 | PputUW4_01364 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.951 |