AFY18556.1 protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AFY18556.1

Diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain; COG2202 FOG: PAS/PAC domain. (819 aa)

Predicted Functional Partners:

AFY19716.1

0.935

AFY18786.1

0.931

AFY22249.1

0.921

AFY20947.1

0.918

AFY19949.1

0.904

gacS

0.904

AFY17600.1

0.903

AFY19821.1

0.901

AFY18655.1

0.892

AFY21617.1

0.888

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY17600.1	AFY18556.1	PputUW4_00392	PputUW4_01350	PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain.	Diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain; COG2202 FOG: PAS/PAC domain.	0.903
AFY17600.1	AFY18655.1	PputUW4_00392	PputUW4_01449	PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain.	[T] COG0642 Signal transduction histidine kinase.	0.861
AFY17600.1	AFY18786.1	PputUW4_00392	PputUW4_01581	PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain.	Hpt sensor hybrid histidine kinase; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.	0.812
AFY17600.1	AFY19716.1	PputUW4_00392	PputUW4_02521	PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain.	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	0.872
AFY17600.1	AFY19821.1	PputUW4_00392	PputUW4_02626	PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain.	Sensory box protein; [T] COG2200 FOG: EAL domain.	0.829
AFY17600.1	AFY19949.1	PputUW4_00392	PputUW4_02754	PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain.	[T] COG0642 Signal transduction histidine kinase.	0.735
AFY17600.1	AFY20947.1	PputUW4_00392	PputUW4_03755	PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain.	Sensory box histidine kinase/response regulator; [ER] COG0591 Na+/proline symporter.	0.873
AFY17600.1	AFY21617.1	PputUW4_00392	PputUW4_04425	PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain.	Sensory box histidine kinase/response regulator; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.	0.863
AFY17600.1	AFY22249.1	PputUW4_00392	PputUW4_05059	PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain.	Response regulator/sensory box/GGDEF domain/EAL domain-containing protein; [T] COG2200 FOG: EAL domain; COG2199 FOG: GGDEF domain.	0.779
AFY17600.1	gacS	PputUW4_00392	PputUW4_04112	PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain.	[T] COG0642 Signal transduction histidine kinase.	0.735
AFY18556.1	AFY17600.1	PputUW4_01350	PputUW4_00392	Diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain; COG2202 FOG: PAS/PAC domain.	PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain.	0.903
AFY18556.1	AFY18655.1	PputUW4_01350	PputUW4_01449	Diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain; COG2202 FOG: PAS/PAC domain.	[T] COG0642 Signal transduction histidine kinase.	0.892
AFY18556.1	AFY18786.1	PputUW4_01350	PputUW4_01581	Diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain; COG2202 FOG: PAS/PAC domain.	Hpt sensor hybrid histidine kinase; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.	0.931
AFY18556.1	AFY19716.1	PputUW4_01350	PputUW4_02521	Diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain; COG2202 FOG: PAS/PAC domain.	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	0.935
AFY18556.1	AFY19821.1	PputUW4_01350	PputUW4_02626	Diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain; COG2202 FOG: PAS/PAC domain.	Sensory box protein; [T] COG2200 FOG: EAL domain.	0.901
AFY18556.1	AFY19949.1	PputUW4_01350	PputUW4_02754	Diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain; COG2202 FOG: PAS/PAC domain.	[T] COG0642 Signal transduction histidine kinase.	0.904
AFY18556.1	AFY20947.1	PputUW4_01350	PputUW4_03755	Diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain; COG2202 FOG: PAS/PAC domain.	Sensory box histidine kinase/response regulator; [ER] COG0591 Na+/proline symporter.	0.918
AFY18556.1	AFY21617.1	PputUW4_01350	PputUW4_04425	Diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain; COG2202 FOG: PAS/PAC domain.	Sensory box histidine kinase/response regulator; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.	0.888
AFY18556.1	AFY22249.1	PputUW4_01350	PputUW4_05059	Diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain; COG2202 FOG: PAS/PAC domain.	Response regulator/sensory box/GGDEF domain/EAL domain-containing protein; [T] COG2200 FOG: EAL domain; COG2199 FOG: GGDEF domain.	0.921
AFY18556.1	gacS	PputUW4_01350	PputUW4_04112	Diguanylate cyclase/phosphodiesterase; [T] COG2199 FOG: GGDEF domain; COG2200 FOG: EAL domain; COG2202 FOG: PAS/PAC domain.	[T] COG0642 Signal transduction histidine kinase.	0.904