STRINGSTRING
AFY18723.1 AFY18723.1 nahD nahD AFY18724.1 AFY18724.1 AFY18343.1 AFY18343.1 AFY21636.1 AFY21636.1 pvdD pvdD AFY21781.1 AFY21781.1 AFY19368.1 AFY19368.1 AFY19389.1 AFY19389.1 pvdI pvdI AFY19468.1 AFY19468.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AFY18723.1Short-chain dehydrogenase/reductase SDR; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (242 aa)    
Predicted Functional Partners:
nahD
[Q] COG3917 2-hydroxychromene-2-carboxylate isomerase.
 
     0.838
AFY18724.1
[K] COG1309 Transcriptional regulator.
 
   
 0.617
AFY18343.1
3-oxoacyl-(acyl-carrier-protein) reductase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
  
 0.583
AFY21636.1
[O] COG0625 Glutathione S-transferase.
 
  
 0.578
pvdD
[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.539
AFY21781.1
Hypothetical protein.
  
     0.500
AFY19368.1
Hypothetical protein.
 
  
 0.480
AFY19389.1
Hypothetical protein.
 
  
 0.477
pvdI
[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.434
AFY19468.1
Short-chain dehydrogenase/reductase SDR; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
  
 0.427
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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