STRINGSTRING
AFY18741.1 AFY18741.1 pyrD1 pyrD1 hydA hydA AFY20122.1 AFY20122.1 gltD2 gltD2 AFY18736.1 AFY18736.1 AFY18737.1 AFY18737.1 AFY18739.1 AFY18739.1 argA argA AFY20858.1 AFY20858.1 AFY18738.1 AFY18738.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
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Experiments
Databases
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[Homology]
Score
AFY18741.1Hypothetical protein. (105 aa)    
Predicted Functional Partners:
pyrD1
[F] COG0167 Dihydroorotate dehydrogenase.
 
 
 0.827
hydA
Dihydropyrimidinase; [F] COG0044 Dihydroorotase and related cyclic amidohydrolases.
 
  
 0.815
AFY20122.1
Transporter membrane protein; [FH] COG1953 Cytosine/uracil/thiamine/allantoin permeases.
 
  
 0.545
gltD2
Glutamate synthase; [ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
 
  
 0.538
AFY18736.1
Hypothetical protein; [M] COG0438 Glycosyltransferase.
  
 
 0.522
AFY18737.1
Hypothetical protein; [M] COG0438 Glycosyltransferase.
  
 
 0.522
AFY18739.1
Acyltransferase family protein; [I] COG1835 Predicted acyltransferases.
       0.484
argA
N-acetylglutamate synthase; [E] COG0548 Acetylglutamate kinase.
  
  
 0.478
AFY20858.1
Cytosine/purines, uracil, thiamine, allantoin permease; [FH] COG1953 Cytosine/uracil/thiamine/allantoin permeases.
 
  
 0.474
AFY18738.1
Hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases.
       0.464
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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