STRINGSTRING
AFY18926.1 AFY18926.1 AFY18925.1 AFY18925.1 prtD prtD AFY18924.1 AFY18924.1 AFY19827.1 AFY19827.1 AFY19381.1 AFY19381.1 AFY19478.1 AFY19478.1 AFY19826.1 AFY19826.1 AFY17325.1 AFY17325.1 metN-2 metN-2 AFY21145.1 AFY21145.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY18926.1[V] COG1132 ABC-type multidrug transport system, ATPase and permease components. (578 aa)    
Predicted Functional Partners:
AFY18925.1
[M] COG0845 Membrane-fusion protein.
  
 0.956
prtD
[V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
  
 
0.903
AFY18924.1
[MU] COG1538 Outer membrane protein.
 
  
 0.885
AFY19827.1
[M] COG0845 Membrane-fusion protein.
  
 0.814
AFY19381.1
Heme peroxidase; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
 0.645
AFY19478.1
Hemolysin-type calcium-binding region; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
 0.612
AFY19826.1
Mannuronan C-5-epimerase, multi-domains protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
 0.610
AFY17325.1
[M] COG0845 Membrane-fusion protein.
  
 0.588
metN-2
ABC transporter family protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
     
0.573
AFY21145.1
[M] COG0845 Membrane-fusion protein.
  
 0.562
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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