STRINGSTRING
AFY18949.1 AFY18949.1 AFY19903.1 AFY19903.1 rimO rimO AFY19108.1 AFY19108.1 phnX1 phnX1 AFY22272.1 AFY22272.1 katG katG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY18949.1[C] COG3038 Cytochrome B561. (186 aa)    
Predicted Functional Partners:
AFY19903.1
[C] COG3038 Cytochrome B561.
  
     0.770
rimO
Ribosomal protein S12 methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
      0.687
AFY19108.1
Hypothetical protein; [S] COG2353 Uncharacterized conserved protein; Belongs to the UPF0312 family.
 
  
 0.530
phnX1
Phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
       0.442
AFY22272.1
Hypothetical protein; [S] COG2353 Uncharacterized conserved protein; Belongs to the UPF0312 family.
 
  
 0.442
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
  
  
 0.402
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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