STRINGSTRING
AFY18977.1 AFY18977.1 AFY18976.1 AFY18976.1 xthA1 xthA1 AFY20779.1 AFY20779.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
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Textmining
[Homology]
Score
AFY18977.1Integrase catalytic protein; [L] COG2801 Transposase and inactivated derivatives. (329 aa)    
Predicted Functional Partners:
AFY18976.1
OmpA/MotB domain-containing protein; [P] COG0226 ABC-type phosphate transport system, periplasmic component.
       0.449
xthA1
[L] COG0708 Exonuclease III.
       0.421
AFY20779.1
Transposon resolvase; [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
   
 0.419
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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