AFY18992.1 protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AFY18992.1

[G] COG1653 ABC-type sugar transport system, periplasmic component. (580 aa)

Predicted Functional Partners:

AFY18990.1

0.997

AFY18989.1

0.993

AFY18987.1

0.992

AFY18988.1

0.992

AFY18991.1

0.924

AFY21447.1

0.707

malG

0.703

malF

0.677

AFY21448.1

0.677

malK

0.622

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY18987.1	AFY18988.1	PputUW4_01782	PputUW4_01783	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	0.964
AFY18987.1	AFY18989.1	PputUW4_01782	PputUW4_01784	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	ABC transporter permease; [G] COG1175 ABC-type sugar transport systems, permease components.	0.996
AFY18987.1	AFY18990.1	PputUW4_01782	PputUW4_01785	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	ABC transporter permease; [G] COG0395 ABC-type sugar transport system, permease component.	0.995
AFY18987.1	AFY18991.1	PputUW4_01782	PputUW4_01786	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	Hypothetical protein.	0.942
AFY18987.1	AFY18992.1	PputUW4_01782	PputUW4_01787	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	[G] COG1653 ABC-type sugar transport system, periplasmic component.	0.992
AFY18987.1	AFY21447.1	PputUW4_01782	PputUW4_04255	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	[G] COG0395 ABC-type sugar transport system, permease component.	0.749
AFY18987.1	AFY21448.1	PputUW4_01782	PputUW4_04256	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	[G] COG1175 ABC-type sugar transport systems, permease components.	0.808
AFY18987.1	malF	PputUW4_01782	PputUW4_03368	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	Maltose/maltodextrin ABC transporter permease protein MalF; [G] COG1175 ABC-type sugar transport systems, permease components.	0.800
AFY18987.1	malG	PputUW4_01782	PputUW4_03369	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	Maltose/maltodextrin ABC transporter permease protein; [G] COG0395 ABC-type sugar transport system, permease component.	0.761
AFY18988.1	AFY18987.1	PputUW4_01783	PputUW4_01782	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	0.964
AFY18988.1	AFY18989.1	PputUW4_01783	PputUW4_01784	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	ABC transporter permease; [G] COG1175 ABC-type sugar transport systems, permease components.	0.996
AFY18988.1	AFY18990.1	PputUW4_01783	PputUW4_01785	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	ABC transporter permease; [G] COG0395 ABC-type sugar transport system, permease component.	0.995
AFY18988.1	AFY18991.1	PputUW4_01783	PputUW4_01786	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	Hypothetical protein.	0.942
AFY18988.1	AFY18992.1	PputUW4_01783	PputUW4_01787	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	[G] COG1653 ABC-type sugar transport system, periplasmic component.	0.992
AFY18988.1	AFY21447.1	PputUW4_01783	PputUW4_04255	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	[G] COG0395 ABC-type sugar transport system, permease component.	0.803
AFY18988.1	AFY21448.1	PputUW4_01783	PputUW4_04256	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	[G] COG1175 ABC-type sugar transport systems, permease components.	0.851
AFY18988.1	malF	PputUW4_01783	PputUW4_03368	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	Maltose/maltodextrin ABC transporter permease protein MalF; [G] COG1175 ABC-type sugar transport systems, permease components.	0.861
AFY18988.1	malG	PputUW4_01783	PputUW4_03369	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	Maltose/maltodextrin ABC transporter permease protein; [G] COG0395 ABC-type sugar transport system, permease component.	0.839
AFY18988.1	malK	PputUW4_01783	PputUW4_03370	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	Maltose/maltodextrin ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	0.457
AFY18989.1	AFY18987.1	PputUW4_01784	PputUW4_01782	ABC transporter permease; [G] COG1175 ABC-type sugar transport systems, permease components.	ABC transporter ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.	0.996