STRINGSTRING
aceA aceA glcB glcB acnA1 acnA1 acnB acnB gcl gcl glcF glcF AFY18050.1 AFY18050.1 eda eda hprA hprA glcD glcD glcE glcE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
aceA[C] COG2224 Isocitrate lyase. (441 aa)    
Predicted Functional Partners:
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
 
 0.994
acnA1
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
   
 
 0.922
acnB
Bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; [C] COG1049 Aconitase B; Belongs to the aconitase/IPM isomerase family.
    
 0.917
gcl
[R] COG3960 Glyoxylate carboligase; Belongs to the TPP enzyme family.
     
 0.915
glcF
Glycolate oxidase iron-sulfur subunit; [C] COG0247 Fe-S oxidoreductase.
     
 0.914
AFY18050.1
[CHR] COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.908
eda
[G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
     
 0.908
hprA
[CHR] COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.908
glcD
Glycolate oxidase subunit GlcD; [C] COG0277 FAD/FMN-containing dehydrogenases.
     
 0.906
glcE
Glycolate oxidase FAD binding subunit GlcE; [C] COG0277 FAD/FMN-containing dehydrogenases.
     
 0.906
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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