STRINGSTRING
mscS1 mscS1 tssE tssE czcS czcS czcR czcR AFY21929.1 AFY21929.1 AFY19064.1 AFY19064.1 tssJ tssJ AFY17752.1 AFY17752.1 AFY19992.1 AFY19992.1 AFY19640.1 AFY19640.1 AFY20271.1 AFY20271.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
mscS1[M] COG0668 Small-conductance mechanosensitive channel. (794 aa)    
Predicted Functional Partners:
tssE
Type VI secretion system lysozyme-like protein; [S] COG3518 Uncharacterized protein conserved in bacteria.
  
     0.543
czcS
Heavy metal sensor signal transduction histidine kinase (STHK); Member of a two-component regulatory system.
     
 0.519
czcR
Two component heavy metal response transcriptional regulator; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.518
AFY21929.1
Periplasmic ligand-binding sensor protein; [S] COG3416 Uncharacterized protein conserved in bacteria.
  
     0.460
AFY19064.1
Permease for cytosine/purines, uracil, thiamine, allantoin; [F] COG1457 Purine-cytosine permease and related proteins; Belongs to the purine-cytosine permease (2.A.39) family.
  
     0.459
tssJ
Type VI secretion lipoprotein; [S] COG3521 Uncharacterized protein conserved in bacteria.
  
     0.442
AFY17752.1
MarC family integral membrane family protein; [U] COG2095 Multiple antibiotic transporter.
 
    0.436
AFY19992.1
Outer membrane autotransporter; [M] COG3468 Type V secretory pathway, adhesin AidA.
  
     0.426
AFY19640.1
Transmembrane transcriptional regulator.
  
     0.424
AFY20271.1
Type VI secretion-associated protein; [S] COG3515 Uncharacterized protein conserved in bacteria.
  
     0.424
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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