STRINGSTRING
AFY19366.1 AFY19366.1 AFY19367.1 AFY19367.1 AFY19384.1 AFY19384.1 rpoB rpoB rpoA rpoA AFY19299.1 AFY19299.1 rpoC rpoC AFY18811.1 AFY18811.1 gltB gltB AFY19365.1 AFY19365.1 rpoZ rpoZ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AFY19366.1Crp/FNR family transcriptional regulator; [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. (240 aa)    
Predicted Functional Partners:
AFY19367.1
Cyclic beta 1-2 glucan synthetase; [G] COG3459 Cellobiose phosphorylase.
 
 
   0.727
AFY19384.1
Sensor histidine kinase; [T] COG0642 Signal transduction histidine kinase.
  
 
 0.515
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.511
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.479
AFY19299.1
Hypothetical protein; [R] COG2823 Predicted periplasmic or secreted lipoprotein.
  
     0.471
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.468
AFY18811.1
[H] COG0720 6-pyruvoyl-tetrahydropterin synthase.
    
  0.445
gltB
[E] COG0069 Glutamate synthase domain 2.
     
 0.443
AFY19365.1
Hypothetical protein.
       0.438
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.435
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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