STRINGSTRING
AFY19472.1 AFY19472.1 pvdD pvdD AFY19473.1 AFY19473.1 AFY19471.1 AFY19471.1 pvdI pvdI AFY18837.1 AFY18837.1 AFY18684.1 AFY18684.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY19472.1Short-chain dehydrogenase/reductase SDR; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family. (245 aa)    
Predicted Functional Partners:
pvdD
[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
 
 0.941
AFY19473.1
Hypothetical protein.
     0.856
AFY19471.1
Zinc-binding oxidoreductase; [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
   
 0.575
pvdI
[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.434
AFY18837.1
[R] COG0656 Aldo/keto reductases, related to diketogulonate reductase.
 
  
 0.403
AFY18684.1
Hypothetical protein.
  
  
 0.401
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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