node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY19527.1 | AFY19528.1 | PputUW4_02328 | PputUW4_02329 | Hypothetical protein; [L] COG0468 RecA/RadA recombinase. | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | 0.995 |
AFY19527.1 | dnaE2 | PputUW4_02328 | PputUW4_02330 | Hypothetical protein; [L] COG0468 RecA/RadA recombinase. | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.970 |
AFY19527.1 | lexA1 | PputUW4_02328 | PputUW4_02327 | Hypothetical protein; [L] COG0468 RecA/RadA recombinase. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.896 |
AFY19527.1 | lexA2 | PputUW4_02328 | PputUW4_03516 | Hypothetical protein; [L] COG0468 RecA/RadA recombinase. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.607 |
AFY19528.1 | AFY19527.1 | PputUW4_02329 | PputUW4_02328 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | Hypothetical protein; [L] COG0468 RecA/RadA recombinase. | 0.995 |
AFY19528.1 | dnaE2 | PputUW4_02329 | PputUW4_02330 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.972 |
AFY19528.1 | dnaN | PputUW4_02329 | PputUW4_00002 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.895 |
AFY19528.1 | holB | PputUW4_02329 | PputUW4_04027 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | DNA polymerase III subunit delta; [L] COG0470 ATPase involved in DNA replication. | 0.702 |
AFY19528.1 | lexA1 | PputUW4_02329 | PputUW4_02327 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.927 |
AFY19528.1 | lexA2 | PputUW4_02329 | PputUW4_03516 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.700 |
AFY19528.1 | polA | PputUW4_02329 | PputUW4_00070 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.762 |
AFY19528.1 | polB | PputUW4_02329 | PputUW4_01630 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | [L] COG0417 DNA polymerase elongation subunit (family B). | 0.899 |
AFY19528.1 | pvdD | PputUW4_02329 | PputUW4_01549 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins. | 0.630 |
AFY19528.1 | recA | PputUW4_02329 | PputUW4_01125 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.757 |
dnaE2 | AFY19527.1 | PputUW4_02330 | PputUW4_02328 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | Hypothetical protein; [L] COG0468 RecA/RadA recombinase. | 0.970 |
dnaE2 | AFY19528.1 | PputUW4_02330 | PputUW4_02329 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | 0.972 |
dnaE2 | dnaN | PputUW4_02330 | PputUW4_00002 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.744 |
dnaE2 | holB | PputUW4_02330 | PputUW4_04027 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | DNA polymerase III subunit delta; [L] COG0470 ATPase involved in DNA replication. | 0.701 |
dnaE2 | lexA1 | PputUW4_02330 | PputUW4_02327 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.886 |
dnaE2 | lexA2 | PputUW4_02330 | PputUW4_03516 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.539 |