Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFY19527.1 | AFY19528.1 | PputUW4_02328 | PputUW4_02329 | Hypothetical protein; [L] COG0468 RecA/RadA recombinase. | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | 0.995 |
| AFY19527.1 | dnaE2 | PputUW4_02328 | PputUW4_02330 | Hypothetical protein; [L] COG0468 RecA/RadA recombinase. | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.970 |
| AFY19527.1 | lexA1 | PputUW4_02328 | PputUW4_02327 | Hypothetical protein; [L] COG0468 RecA/RadA recombinase. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.896 |
| AFY19528.1 | AFY19527.1 | PputUW4_02329 | PputUW4_02328 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | Hypothetical protein; [L] COG0468 RecA/RadA recombinase. | 0.995 |
| AFY19528.1 | dnaE2 | PputUW4_02329 | PputUW4_02330 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.972 |
| AFY19528.1 | dnaN | PputUW4_02329 | PputUW4_00002 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.895 |
| AFY19528.1 | holB | PputUW4_02329 | PputUW4_04027 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | DNA polymerase III subunit delta; [L] COG0470 ATPase involved in DNA replication. | 0.702 |
| AFY19528.1 | lexA1 | PputUW4_02329 | PputUW4_02327 | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.927 |
| dnaE2 | AFY19527.1 | PputUW4_02330 | PputUW4_02328 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | Hypothetical protein; [L] COG0468 RecA/RadA recombinase. | 0.970 |
| dnaE2 | AFY19528.1 | PputUW4_02330 | PputUW4_02329 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | 0.972 |
| dnaE2 | dnaN | PputUW4_02330 | PputUW4_00002 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.744 |
| dnaE2 | dnaQ | PputUW4_02330 | PputUW4_02878 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.704 |
| dnaE2 | dnaX | PputUW4_02330 | PputUW4_03578 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.729 |
| dnaE2 | holA | PputUW4_02330 | PputUW4_04772 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | [L] COG1466 DNA polymerase III, delta subunit. | 0.734 |
| dnaE2 | holB | PputUW4_02330 | PputUW4_04027 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | DNA polymerase III subunit delta; [L] COG0470 ATPase involved in DNA replication. | 0.701 |
| dnaE2 | holC | PputUW4_02330 | PputUW4_00952 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | [L] COG2927 DNA polymerase III, chi subunit. | 0.699 |
| dnaE2 | lexA1 | PputUW4_02330 | PputUW4_02327 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.886 |
| dnaE2 | ssb | PputUW4_02330 | PputUW4_04853 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.705 |
| dnaN | AFY19528.1 | PputUW4_00002 | PputUW4_02329 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Hypothetical protein; [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | 0.895 |
| dnaN | dnaE2 | PputUW4_00002 | PputUW4_02330 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.744 |
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