STRINGSTRING
AFY19618.1 AFY19618.1 AFY17773.1 AFY17773.1 AFY18281.1 AFY18281.1 AFY21509.1 AFY21509.1 AFY21513.1 AFY21513.1 ompH ompH AFY21514.1 AFY21514.1 AFY22561.1 AFY22561.1 AFY20065.1 AFY20065.1 mucA mucA AFY21137.1 AFY21137.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY19618.1Transcriptional regulator. (120 aa)    
Predicted Functional Partners:
AFY17773.1
Hypothetical protein.
  
     0.730
AFY18281.1
Hypothetical protein.
  
     0.714
AFY21509.1
Hypothetical protein.
  
     0.679
AFY21513.1
Hypothetical protein; [R] COG3233 Predicted deacetylase.
  
     0.678
ompH
[M] COG2825 Outer membrane protein.
  
     0.671
AFY21514.1
Hypothetical protein; [S] COG0392 Predicted integral membrane protein.
  
     0.649
AFY22561.1
LysR family regulatory protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.618
AFY20065.1
Metallophosphoesterase; [T] COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
  
     0.597
mucA
Sigma factor algU negative regulatory protein MucA; [T] COG3073 Negative regulator of sigma E activity.
  
     0.590
AFY21137.1
YgfB and YecA; [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA; Belongs to the UPF0149 family.
  
     0.586
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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