pvdQ protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pvdQ

Acyl-homoserine lactone acylase; [R] COG2366 Protein related to penicillin acylase. (782 aa)

Predicted Functional Partners:

pvdL

0.868

pvdA

0.817

pvdH

0.800

pvdJ

0.785

pvdE

0.779

mbtH

0.759

pvdM

0.714

pvdI

0.701

pvdO

0.671

pvdN

0.668

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
mbtH	pvdA	PputUW4_01501	PputUW4_01576	MbtH-like protein; [S] COG3251 Uncharacterized protein conserved in bacteria.	L-ornithine 5-monooxygenase; [Q] COG3486 Lysine/ornithine N-monooxygenase.	0.904
mbtH	pvdE	PputUW4_01501	PputUW4_01567	MbtH-like protein; [S] COG3251 Uncharacterized protein conserved in bacteria.	Pyoverdine biosynthesis protein PvdE; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.	0.872
mbtH	pvdH	PputUW4_01501	PputUW4_01500	MbtH-like protein; [S] COG3251 Uncharacterized protein conserved in bacteria.	[E] COG0160 4-aminobutyrate aminotransferase and related aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.880
mbtH	pvdI	PputUW4_01501	PputUW4_01547	MbtH-like protein; [S] COG3251 Uncharacterized protein conserved in bacteria.	[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.995
mbtH	pvdJ	PputUW4_01501	PputUW4_01550	MbtH-like protein; [S] COG3251 Uncharacterized protein conserved in bacteria.	[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.998
mbtH	pvdL	PputUW4_01501	PputUW4_01483	MbtH-like protein; [S] COG3251 Uncharacterized protein conserved in bacteria.	[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.976
mbtH	pvdM	PputUW4_01501	PputUW4_01570	MbtH-like protein; [S] COG3251 Uncharacterized protein conserved in bacteria.	Dipeptidase; [E] COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog.	0.610
mbtH	pvdN	PputUW4_01501	PputUW4_01569	MbtH-like protein; [S] COG3251 Uncharacterized protein conserved in bacteria.	PvdN; [E] COG0520 Selenocysteine lyase.	0.571
mbtH	pvdO	PputUW4_01501	PputUW4_01568	MbtH-like protein; [S] COG3251 Uncharacterized protein conserved in bacteria.	PvdO; [S] COG1262 Uncharacterized conserved protein.	0.490
mbtH	pvdQ	PputUW4_01501	PputUW4_02454	MbtH-like protein; [S] COG3251 Uncharacterized protein conserved in bacteria.	Acyl-homoserine lactone acylase; [R] COG2366 Protein related to penicillin acylase.	0.759
pvdA	mbtH	PputUW4_01576	PputUW4_01501	L-ornithine 5-monooxygenase; [Q] COG3486 Lysine/ornithine N-monooxygenase.	MbtH-like protein; [S] COG3251 Uncharacterized protein conserved in bacteria.	0.904
pvdA	pvdE	PputUW4_01576	PputUW4_01567	L-ornithine 5-monooxygenase; [Q] COG3486 Lysine/ornithine N-monooxygenase.	Pyoverdine biosynthesis protein PvdE; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.	0.861
pvdA	pvdH	PputUW4_01576	PputUW4_01500	L-ornithine 5-monooxygenase; [Q] COG3486 Lysine/ornithine N-monooxygenase.	[E] COG0160 4-aminobutyrate aminotransferase and related aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.774
pvdA	pvdI	PputUW4_01576	PputUW4_01547	L-ornithine 5-monooxygenase; [Q] COG3486 Lysine/ornithine N-monooxygenase.	[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.948
pvdA	pvdJ	PputUW4_01576	PputUW4_01550	L-ornithine 5-monooxygenase; [Q] COG3486 Lysine/ornithine N-monooxygenase.	[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.920
pvdA	pvdL	PputUW4_01576	PputUW4_01483	L-ornithine 5-monooxygenase; [Q] COG3486 Lysine/ornithine N-monooxygenase.	[Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.900
pvdA	pvdM	PputUW4_01576	PputUW4_01570	L-ornithine 5-monooxygenase; [Q] COG3486 Lysine/ornithine N-monooxygenase.	Dipeptidase; [E] COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog.	0.621
pvdA	pvdN	PputUW4_01576	PputUW4_01569	L-ornithine 5-monooxygenase; [Q] COG3486 Lysine/ornithine N-monooxygenase.	PvdN; [E] COG0520 Selenocysteine lyase.	0.526
pvdA	pvdO	PputUW4_01576	PputUW4_01568	L-ornithine 5-monooxygenase; [Q] COG3486 Lysine/ornithine N-monooxygenase.	PvdO; [S] COG1262 Uncharacterized conserved protein.	0.658
pvdA	pvdQ	PputUW4_01576	PputUW4_02454	L-ornithine 5-monooxygenase; [Q] COG3486 Lysine/ornithine N-monooxygenase.	Acyl-homoserine lactone acylase; [R] COG2366 Protein related to penicillin acylase.	0.817