Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY17508.1 | AFY19716.1 | PputUW4_00300 | PputUW4_02521 | [NT] COG0840 Methyl-accepting chemotaxis protein. | Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase. | 0.538 |
AFY17508.1 | AFY19717.1 | PputUW4_00300 | PputUW4_02522 | [NT] COG0840 Methyl-accepting chemotaxis protein. | [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins. | 0.901 |
AFY17508.1 | AFY19718.1 | PputUW4_00300 | PputUW4_02523 | [NT] COG0840 Methyl-accepting chemotaxis protein. | CheB methylesterase; [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain. | 0.934 |
AFY17508.1 | cheA | PputUW4_00300 | PputUW4_03855 | [NT] COG0840 Methyl-accepting chemotaxis protein. | [NT] COG0643 Chemotaxis protein histidine kinase and related kinases. | 0.978 |
AFY17508.1 | cheR | PputUW4_00300 | PputUW4_04138 | [NT] COG0840 Methyl-accepting chemotaxis protein. | Chemotaxis protein methyltransferase CheR; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.942 |
AFY17508.1 | cheW1 | PputUW4_00300 | PputUW4_03849 | [NT] COG0840 Methyl-accepting chemotaxis protein. | [NT] COG0835 Chemotaxis signal transduction protein. | 0.973 |
AFY17508.1 | pilL | PputUW4_00300 | PputUW4_05101 | [NT] COG0840 Methyl-accepting chemotaxis protein. | Type IV pili sensor histidine kinase/response regulator; [NT] COG0643 Chemotaxis protein histidine kinase and related kinases. | 0.888 |
AFY17508.1 | wspE | PputUW4_00300 | PputUW4_01044 | [NT] COG0840 Methyl-accepting chemotaxis protein. | Sensor histidine kinase/response regulator; [NT] COG0643 Chemotaxis protein histidine kinase and related kinases. | 0.931 |
AFY19104.1 | AFY19716.1 | PputUW4_01899 | PputUW4_02521 | [NT] COG0840 Methyl-accepting chemotaxis protein. | Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase. | 0.538 |
AFY19104.1 | AFY19717.1 | PputUW4_01899 | PputUW4_02522 | [NT] COG0840 Methyl-accepting chemotaxis protein. | [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins. | 0.895 |
AFY19104.1 | AFY19718.1 | PputUW4_01899 | PputUW4_02523 | [NT] COG0840 Methyl-accepting chemotaxis protein. | CheB methylesterase; [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain. | 0.933 |
AFY19104.1 | cheA | PputUW4_01899 | PputUW4_03855 | [NT] COG0840 Methyl-accepting chemotaxis protein. | [NT] COG0643 Chemotaxis protein histidine kinase and related kinases. | 0.978 |
AFY19104.1 | cheR | PputUW4_01899 | PputUW4_04138 | [NT] COG0840 Methyl-accepting chemotaxis protein. | Chemotaxis protein methyltransferase CheR; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.942 |
AFY19104.1 | cheW1 | PputUW4_01899 | PputUW4_03849 | [NT] COG0840 Methyl-accepting chemotaxis protein. | [NT] COG0835 Chemotaxis signal transduction protein. | 0.973 |
AFY19104.1 | pilL | PputUW4_01899 | PputUW4_05101 | [NT] COG0840 Methyl-accepting chemotaxis protein. | Type IV pili sensor histidine kinase/response regulator; [NT] COG0643 Chemotaxis protein histidine kinase and related kinases. | 0.906 |
AFY19104.1 | wspE | PputUW4_01899 | PputUW4_01044 | [NT] COG0840 Methyl-accepting chemotaxis protein. | Sensor histidine kinase/response regulator; [NT] COG0643 Chemotaxis protein histidine kinase and related kinases. | 0.931 |
AFY19716.1 | AFY17508.1 | PputUW4_02521 | PputUW4_00300 | Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase. | [NT] COG0840 Methyl-accepting chemotaxis protein. | 0.538 |
AFY19716.1 | AFY19104.1 | PputUW4_02521 | PputUW4_01899 | Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase. | [NT] COG0840 Methyl-accepting chemotaxis protein. | 0.538 |
AFY19716.1 | AFY19717.1 | PputUW4_02521 | PputUW4_02522 | Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase. | [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins. | 0.976 |
AFY19716.1 | AFY19718.1 | PputUW4_02521 | PputUW4_02523 | Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase. | CheB methylesterase; [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain. | 0.971 |
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