mexF protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mexF

Multidrug efflux RND transporter permease MexF; [V] COG0841 Cation/multidrug efflux pump. (1059 aa)

Predicted Functional Partners:

AFY19731.1

0.994

AFY19729.1

0.968

AFY19636.1

0.920

AFY18420.1

0.918

AFY18418.1

0.879

AFY21683.1

0.856

AFY20008.1

0.846

AFY20005.1

0.828

AFY17344.1

0.804

AFY19340.1

0.802

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY17344.1	AFY18420.1	PputUW4_00136	PputUW4_01213	[MU] COG1538 Outer membrane protein.	[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.801
AFY17344.1	AFY19636.1	PputUW4_00136	PputUW4_02439	[MU] COG1538 Outer membrane protein.	[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.796
AFY17344.1	AFY19731.1	PputUW4_00136	PputUW4_02536	[MU] COG1538 Outer membrane protein.	RND family efflux transporter MFP subunit; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.830
AFY17344.1	AFY20008.1	PputUW4_00136	PputUW4_02813	[MU] COG1538 Outer membrane protein.	Multidrug efflux system inner membrane protein; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.700
AFY17344.1	AFY21683.1	PputUW4_00136	PputUW4_04491	[MU] COG1538 Outer membrane protein.	RND family multidrug transporter membrane fusion protein; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.641
AFY17344.1	mexF	PputUW4_00136	PputUW4_02535	[MU] COG1538 Outer membrane protein.	Multidrug efflux RND transporter permease MexF; [V] COG0841 Cation/multidrug efflux pump.	0.804
AFY18418.1	AFY18420.1	PputUW4_01211	PputUW4_01213	[MU] COG1538 Outer membrane protein.	[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.995
AFY18418.1	AFY19636.1	PputUW4_01211	PputUW4_02439	[MU] COG1538 Outer membrane protein.	[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.982
AFY18418.1	AFY19731.1	PputUW4_01211	PputUW4_02536	[MU] COG1538 Outer membrane protein.	RND family efflux transporter MFP subunit; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.868
AFY18418.1	AFY20008.1	PputUW4_01211	PputUW4_02813	[MU] COG1538 Outer membrane protein.	Multidrug efflux system inner membrane protein; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.696
AFY18418.1	AFY21683.1	PputUW4_01211	PputUW4_04491	[MU] COG1538 Outer membrane protein.	RND family multidrug transporter membrane fusion protein; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.644
AFY18418.1	mexF	PputUW4_01211	PputUW4_02535	[MU] COG1538 Outer membrane protein.	Multidrug efflux RND transporter permease MexF; [V] COG0841 Cation/multidrug efflux pump.	0.879
AFY18420.1	AFY17344.1	PputUW4_01213	PputUW4_00136	[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	[MU] COG1538 Outer membrane protein.	0.801
AFY18420.1	AFY18418.1	PputUW4_01213	PputUW4_01211	[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	[MU] COG1538 Outer membrane protein.	0.995
AFY18420.1	AFY19340.1	PputUW4_01213	PputUW4_02141	[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	RND efflux system outer membrane lipoprotein; [MU] COG1538 Outer membrane protein.	0.819
AFY18420.1	AFY19636.1	PputUW4_01213	PputUW4_02439	[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.908
AFY18420.1	AFY19729.1	PputUW4_01213	PputUW4_02534	[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	[MU] COG1538 Outer membrane protein.	0.809
AFY18420.1	AFY20005.1	PputUW4_01213	PputUW4_02810	[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	[MU] COG1538 Outer membrane protein.	0.797
AFY18420.1	mexF	PputUW4_01213	PputUW4_02535	[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Multidrug efflux RND transporter permease MexF; [V] COG0841 Cation/multidrug efflux pump.	0.918
AFY19340.1	AFY18420.1	PputUW4_02141	PputUW4_01213	RND efflux system outer membrane lipoprotein; [MU] COG1538 Outer membrane protein.	[M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.819