STRINGSTRING
AFY19771.1 AFY19771.1 soxA soxA AFY19772.1 AFY19772.1 phnW2 phnW2 AFY20301.1 AFY20301.1 AFY18502.1 AFY18502.1 AFY19773.1 AFY19773.1 AFY19960.1 AFY19960.1 glnA5 glnA5 glnA3 glnA3 soxD soxD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
AFY19771.1FAD dependent oxidoreductase; [E] COG0665 Glycine/D-amino acid oxidases (deaminating). (463 aa)    
Predicted Functional Partners:
soxA
Sarcosine oxidase, alpha subunit; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
  
 
 0.728
AFY19772.1
Hypothetical protein; [J] COG0251 Putative translation initiation inhibitor, yjgF family.
  
    0.640
phnW2
2-aminoethylphosphonate aminotransferase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily.
  
 
 0.552
AFY20301.1
[R] COG2071 Predicted glutamine amidotransferases.
 
  
 0.505
AFY18502.1
[E] COG0174 Glutamine synthetase.
 
  
 0.445
AFY19773.1
[K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.445
AFY19960.1
[E] COG0174 Glutamine synthetase.
 
  
 0.426
glnA5
[E] COG0174 Glutamine synthetase.
 
  
 0.426
glnA3
[E] COG0174 Glutamine synthetase.
 
  
 0.409
soxD
[E] COG4311 Sarcosine oxidase delta subunit.
  
 
 0.405
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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