STRINGSTRING
AFY19826.1 AFY19826.1 AFY19827.1 AFY19827.1 prtD prtD AFY18925.1 AFY18925.1 AFY18926.1 AFY18926.1 AFY19165.1 AFY19165.1 AFY21144.1 AFY21144.1 AFY17324.1 AFY17324.1 AFY17425.1 AFY17425.1 algG algG AFY21246.1 AFY21246.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AFY19826.1Mannuronan C-5-epimerase, multi-domains protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins. (1871 aa)    
Predicted Functional Partners:
AFY19827.1
[M] COG0845 Membrane-fusion protein.
 
  
 0.644
prtD
[V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 
 0.637
AFY18925.1
[M] COG0845 Membrane-fusion protein.
 
  
 0.620
AFY18926.1
[V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 
 0.610
AFY19165.1
Hypothetical protein.
 
 
 0.602
AFY21144.1
Type I secretion system ATPase; [V] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
  
 0.546
AFY17324.1
Type I secretion system ATPase family protein; [V] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
  
 0.541
AFY17425.1
[O] COG1404 Subtilisin-like serine proteases.
  
  
 0.532
algG
Alginate biosynthesis protein AlgG.
 
  
 0.486
AFY21246.1
Competence protein; [R] COG0658 Predicted membrane metal-binding protein.
  
  
 0.466
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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