STRINGSTRING
AFY20070.1 AFY20070.1 AFY20069.1 AFY20069.1 AFY18053.1 AFY18053.1 AFY18452.1 AFY18452.1 AFY19401.1 AFY19401.1 AFY21258.1 AFY21258.1 AFY20029.1 AFY20029.1 AFY21368.1 AFY21368.1 AFY20458.1 AFY20458.1 AFY17778.1 AFY17778.1 AFY18208.1 AFY18208.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY20070.1[K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
AFY20069.1
Hypothetical protein.
       0.541
AFY18053.1
GCN5-related N-acetyltransferase; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.511
AFY18452.1
Lysine exporter protein LysE/YggA; [E] COG1280 Putative threonine efflux protein.
  
     0.422
AFY19401.1
Hypothetical protein.
  
     0.420
AFY21258.1
[U] COG5010 Flp pilus assembly protein TadD, contains TPR repeats.
  
     0.420
AFY20029.1
[K] COG0583 Transcriptional regulator.
  
     0.418
AFY21368.1
Leucine-rich repeat-containing protein.
  
     0.418
AFY20458.1
[G] COG0726 Predicted xylanase/chitin deacetylase.
  
 
   0.413
AFY17778.1
PAS/PAC sensor signal transduction histidine kinase; [T] COG2202 FOG: PAS/PAC domain.
  
   
 0.410
AFY18208.1
Hypothetical protein.
  
     0.410
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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