sleB protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sleB

[M] COG3773 Cell wall hydrolyses involved in spore germination. (206 aa)

Predicted Functional Partners:

AFY20247.1

0.680

AFY20243.1

0.531

AFY20242.1

0.514

AFY20244.1

0.487

AFY20245.1

0.452

AFY17773.1

0.444

AFY21964.1

0.418

AFY18437.1

0.405

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY17773.1	sleB	PputUW4_00565	PputUW4_03051	Hypothetical protein.	[M] COG3773 Cell wall hydrolyses involved in spore germination.	0.444
AFY18437.1	sleB	PputUW4_01230	PputUW4_03051	[S] COG3762 Predicted membrane protein.	[M] COG3773 Cell wall hydrolyses involved in spore germination.	0.405
AFY20242.1	AFY20243.1	PputUW4_03047	PputUW4_03048	Glycosyl transferase family protein; [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.	Lipid A biosynthesis N-terminal domain protein; [S] COG3952 Predicted membrane protein.	0.913
AFY20242.1	AFY20244.1	PputUW4_03047	PputUW4_03049	Glycosyl transferase family protein; [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.967
AFY20242.1	AFY20245.1	PputUW4_03047	PputUW4_03050	Glycosyl transferase family protein; [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	0.745
AFY20242.1	sleB	PputUW4_03047	PputUW4_03051	Glycosyl transferase family protein; [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.	[M] COG3773 Cell wall hydrolyses involved in spore germination.	0.514
AFY20243.1	AFY20242.1	PputUW4_03048	PputUW4_03047	Lipid A biosynthesis N-terminal domain protein; [S] COG3952 Predicted membrane protein.	Glycosyl transferase family protein; [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.	0.913
AFY20243.1	AFY20244.1	PputUW4_03048	PputUW4_03049	Lipid A biosynthesis N-terminal domain protein; [S] COG3952 Predicted membrane protein.	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.942
AFY20243.1	AFY20245.1	PputUW4_03048	PputUW4_03050	Lipid A biosynthesis N-terminal domain protein; [S] COG3952 Predicted membrane protein.	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	0.706
AFY20243.1	sleB	PputUW4_03048	PputUW4_03051	Lipid A biosynthesis N-terminal domain protein; [S] COG3952 Predicted membrane protein.	[M] COG3773 Cell wall hydrolyses involved in spore germination.	0.531
AFY20244.1	AFY20242.1	PputUW4_03049	PputUW4_03047	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	Glycosyl transferase family protein; [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.	0.967
AFY20244.1	AFY20243.1	PputUW4_03049	PputUW4_03048	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	Lipid A biosynthesis N-terminal domain protein; [S] COG3952 Predicted membrane protein.	0.942
AFY20244.1	AFY20245.1	PputUW4_03049	PputUW4_03050	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	0.813
AFY20244.1	sleB	PputUW4_03049	PputUW4_03051	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	[M] COG3773 Cell wall hydrolyses involved in spore germination.	0.487
AFY20245.1	AFY20242.1	PputUW4_03050	PputUW4_03047	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	Glycosyl transferase family protein; [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.	0.745
AFY20245.1	AFY20243.1	PputUW4_03050	PputUW4_03048	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	Lipid A biosynthesis N-terminal domain protein; [S] COG3952 Predicted membrane protein.	0.706
AFY20245.1	AFY20244.1	PputUW4_03050	PputUW4_03049	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	[M] COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.813
AFY20245.1	sleB	PputUW4_03050	PputUW4_03051	NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.	[M] COG3773 Cell wall hydrolyses involved in spore germination.	0.452
AFY20247.1	sleB	PputUW4_03052	PputUW4_03051	SCP-like extracellular protein; [S] COG2340 Uncharacterized protein with SCP/PR1 domains.	[M] COG3773 Cell wall hydrolyses involved in spore germination.	0.680
AFY21964.1	sleB	PputUW4_04774	PputUW4_03051	[M] COG2951 Membrane-bound lytic murein transglycosylase B.	[M] COG3773 Cell wall hydrolyses involved in spore germination.	0.418