tssM protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tssM

ImcF domain-containing protein; [S] COG3523 Uncharacterized protein conserved in bacteria. (1126 aa)

Predicted Functional Partners:

AFY20269.1

0.995

tssC

0.994

tssB

0.993

AFY20283.1

0.991

hcp

0.990

clpV

0.987

tssJ

0.970

AFY20271.1

0.970

tssE

0.967

AFY20270.1

0.962

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY20269.1	AFY20270.1	PputUW4_03074	PputUW4_03075	Type VI secretion protein; [S] COG3520 Uncharacterized protein conserved in bacteria.	Type VI secretion protein; [S] COG3519 Uncharacterized protein conserved in bacteria.	0.978
AFY20269.1	AFY20271.1	PputUW4_03074	PputUW4_03076	Type VI secretion protein; [S] COG3520 Uncharacterized protein conserved in bacteria.	Type VI secretion-associated protein; [S] COG3515 Uncharacterized protein conserved in bacteria.	0.988
AFY20269.1	AFY20283.1	PputUW4_03074	PputUW4_03088	Type VI secretion protein; [S] COG3520 Uncharacterized protein conserved in bacteria.	Type VI secretion protein; [S] COG3522 Uncharacterized protein conserved in bacteria.	0.991
AFY20269.1	clpV	PputUW4_03074	PputUW4_03084	Type VI secretion protein; [S] COG3520 Uncharacterized protein conserved in bacteria.	ClpV1 family type VI secretion ATPase; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.	0.990
AFY20269.1	hcp	PputUW4_03074	PputUW4_03085	Type VI secretion protein; [S] COG3520 Uncharacterized protein conserved in bacteria.	Type VI secretion system effector, Hcp1 family; [S] COG3157 Hemolysin-coregulated protein (uncharacterized).	0.991
AFY20269.1	tssB	PputUW4_03074	PputUW4_03090	Type VI secretion protein; [S] COG3520 Uncharacterized protein conserved in bacteria.	Type VI secretion protein; [S] COG3516 Uncharacterized protein conserved in bacteria.	0.994
AFY20269.1	tssC	PputUW4_03074	PputUW4_03089	Type VI secretion protein; [S] COG3520 Uncharacterized protein conserved in bacteria.	EvpB family type VI secretion protein; [S] COG3517 Uncharacterized protein conserved in bacteria.	0.992
AFY20269.1	tssE	PputUW4_03074	PputUW4_03072	Type VI secretion protein; [S] COG3520 Uncharacterized protein conserved in bacteria.	Type VI secretion system lysozyme-like protein; [S] COG3518 Uncharacterized protein conserved in bacteria.	0.982
AFY20269.1	tssJ	PputUW4_03074	PputUW4_03073	Type VI secretion protein; [S] COG3520 Uncharacterized protein conserved in bacteria.	Type VI secretion lipoprotein; [S] COG3521 Uncharacterized protein conserved in bacteria.	0.975
AFY20269.1	tssM	PputUW4_03074	PputUW4_03077	Type VI secretion protein; [S] COG3520 Uncharacterized protein conserved in bacteria.	ImcF domain-containing protein; [S] COG3523 Uncharacterized protein conserved in bacteria.	0.995
AFY20270.1	AFY20269.1	PputUW4_03075	PputUW4_03074	Type VI secretion protein; [S] COG3519 Uncharacterized protein conserved in bacteria.	Type VI secretion protein; [S] COG3520 Uncharacterized protein conserved in bacteria.	0.978
AFY20270.1	AFY20271.1	PputUW4_03075	PputUW4_03076	Type VI secretion protein; [S] COG3519 Uncharacterized protein conserved in bacteria.	Type VI secretion-associated protein; [S] COG3515 Uncharacterized protein conserved in bacteria.	0.965
AFY20270.1	AFY20283.1	PputUW4_03075	PputUW4_03088	Type VI secretion protein; [S] COG3519 Uncharacterized protein conserved in bacteria.	Type VI secretion protein; [S] COG3522 Uncharacterized protein conserved in bacteria.	0.968
AFY20270.1	clpV	PputUW4_03075	PputUW4_03084	Type VI secretion protein; [S] COG3519 Uncharacterized protein conserved in bacteria.	ClpV1 family type VI secretion ATPase; [O] COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.	0.893
AFY20270.1	hcp	PputUW4_03075	PputUW4_03085	Type VI secretion protein; [S] COG3519 Uncharacterized protein conserved in bacteria.	Type VI secretion system effector, Hcp1 family; [S] COG3157 Hemolysin-coregulated protein (uncharacterized).	0.905
AFY20270.1	tssB	PputUW4_03075	PputUW4_03090	Type VI secretion protein; [S] COG3519 Uncharacterized protein conserved in bacteria.	Type VI secretion protein; [S] COG3516 Uncharacterized protein conserved in bacteria.	0.945
AFY20270.1	tssC	PputUW4_03075	PputUW4_03089	Type VI secretion protein; [S] COG3519 Uncharacterized protein conserved in bacteria.	EvpB family type VI secretion protein; [S] COG3517 Uncharacterized protein conserved in bacteria.	0.956
AFY20270.1	tssE	PputUW4_03075	PputUW4_03072	Type VI secretion protein; [S] COG3519 Uncharacterized protein conserved in bacteria.	Type VI secretion system lysozyme-like protein; [S] COG3518 Uncharacterized protein conserved in bacteria.	0.978
AFY20270.1	tssJ	PputUW4_03075	PputUW4_03073	Type VI secretion protein; [S] COG3519 Uncharacterized protein conserved in bacteria.	Type VI secretion lipoprotein; [S] COG3521 Uncharacterized protein conserved in bacteria.	0.977
AFY20270.1	tssM	PputUW4_03075	PputUW4_03077	Type VI secretion protein; [S] COG3519 Uncharacterized protein conserved in bacteria.	ImcF domain-containing protein; [S] COG3523 Uncharacterized protein conserved in bacteria.	0.962