STRINGSTRING
AFY20281.1 AFY20281.1 hcp hcp tssL tssL AFY20283.1 AFY20283.1 tssM tssM AFY20271.1 AFY20271.1 vgrG1 vgrG1 tssC tssC tssE tssE AFY20269.1 AFY20269.1 tssB tssB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY20281.1OmpA/MotB domain-containing protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. (575 aa)    
Predicted Functional Partners:
hcp
Type VI secretion system effector, Hcp1 family; [S] COG3157 Hemolysin-coregulated protein (uncharacterized).
 
     0.920
tssL
DotU family type IV/VI secretion system protein; [S] COG3455 Uncharacterized protein conserved in bacteria.
 
    0.913
AFY20283.1
Type VI secretion protein; [S] COG3522 Uncharacterized protein conserved in bacteria.
 
    0.890
tssM
ImcF domain-containing protein; [S] COG3523 Uncharacterized protein conserved in bacteria.
 
  
 0.817
AFY20271.1
Type VI secretion-associated protein; [S] COG3515 Uncharacterized protein conserved in bacteria.
 
     0.811
vgrG1
Type VI secretion system Vgr family protein; [S] COG3501 Uncharacterized protein conserved in bacteria.
 
  
 0.800
tssC
EvpB family type VI secretion protein; [S] COG3517 Uncharacterized protein conserved in bacteria.
 
    0.787
tssE
Type VI secretion system lysozyme-like protein; [S] COG3518 Uncharacterized protein conserved in bacteria.
 
     0.783
AFY20269.1
Type VI secretion protein; [S] COG3520 Uncharacterized protein conserved in bacteria.
 
    0.768
tssB
Type VI secretion protein; [S] COG3516 Uncharacterized protein conserved in bacteria.
 
    0.758
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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