STRINGSTRING
AFY20301.1 AFY20301.1 puuA puuA puuB4 puuB4 dadA2 dadA2 pvdM pvdM glnA5 glnA5 AFY19960.1 AFY19960.1 puuB2 puuB2 puuB6 puuB6 puuB5 puuB5 puuB3 puuB3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
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[Homology]
Score
AFY20301.1[R] COG2071 Predicted glutamine amidotransferases. (253 aa)    
Predicted Functional Partners:
puuA
[E] COG0174 Glutamine synthetase.
 
  
 0.761
puuB4
FAD dependent oxidoreductase; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.743
dadA2
[E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.702
pvdM
Dipeptidase; [E] COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog.
     0.701
glnA5
[E] COG0174 Glutamine synthetase.
 
  
 0.694
AFY19960.1
[E] COG0174 Glutamine synthetase.
 
  
 0.691
puuB2
FAD dependent oxidoreductase; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.684
puuB6
Gamma-glutamylputrescine oxidoreductase; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.684
puuB5
FAD dependent oxidoreductase; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.682
puuB3
[E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.673
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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