STRINGSTRING
AFY20354.1 AFY20354.1 AFY20355.1 AFY20355.1 AFY20353.1 AFY20353.1 argE1 argE1 AFY21937.1 AFY21937.1 AFY20351.1 AFY20351.1 AFY20356.1 AFY20356.1 fusA2 fusA2 AFY20357.1 AFY20357.1 AFY20390.1 AFY20390.1 AFY20435.1 AFY20435.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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Coexpression
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Textmining
[Homology]
Score
AFY20354.1Endoribonuclease L-PSP; [J] COG0251 Putative translation initiation inhibitor, yjgF family. (136 aa)    
Predicted Functional Partners:
AFY20355.1
FAD dependent oxidoreductase; [P] COG2072 Predicted flavoprotein involved in K+ transport.
    0.985
AFY20353.1
Hypothetical protein; [S] COG3342 Uncharacterized conserved protein.
 
     0.952
argE1
[E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
 
    0.867
AFY21937.1
[K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.763
AFY20351.1
Binding protein component of ABC transporter; [E] COG0687 Spermidine/putrescine-binding periplasmic protein.
       0.658
AFY20356.1
Cystathionine beta-synthase; [E] COG0031 Cysteine synthase.
  
  
 0.511
fusA2
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
   
 0.483
AFY20357.1
[E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
  
    0.474
AFY20390.1
Hypothetical protein.
  
     0.473
AFY20435.1
Luciferase-like monooxygenase family protein; [C] COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
 
    0.459
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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