AFY20362.1 protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AFY20362.1

Hypothetical protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family. (587 aa)

Predicted Functional Partners:

rep1

0.855

AFY17236.1

0.646

phnE1

0.421

phnE2

0.421

phnD

0.410

phnC

0.410

AFY17870.1

0.402

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY17236.1	AFY20362.1	PputUW4_00027	PputUW4_03167	Hypothetical protein; [R] COG2910 Putative NADH-flavin reductase.	Hypothetical protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.	0.646
AFY17870.1	AFY20362.1	PputUW4_00663	PputUW4_03167	Hypothetical protein; [S] COG1479 Uncharacterized conserved protein.	Hypothetical protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.	0.402
AFY20362.1	AFY17236.1	PputUW4_03167	PputUW4_00027	Hypothetical protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.	Hypothetical protein; [R] COG2910 Putative NADH-flavin reductase.	0.646
AFY20362.1	AFY17870.1	PputUW4_03167	PputUW4_00663	Hypothetical protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.	Hypothetical protein; [S] COG1479 Uncharacterized conserved protein.	0.402
AFY20362.1	phnC	PputUW4_03167	PputUW4_03164	Hypothetical protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.	Phosphonate-transporting ATPase; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.410
AFY20362.1	phnD	PputUW4_03167	PputUW4_03163	Hypothetical protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.	Phosphonate-binding periplasmic protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.	0.410
AFY20362.1	phnE1	PputUW4_03167	PputUW4_03165	Hypothetical protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.	[P] COG3639 ABC-type phosphate/phosphonate transport system, permease component.	0.421
AFY20362.1	phnE2	PputUW4_03167	PputUW4_03166	Hypothetical protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.	[P] COG3639 ABC-type phosphate/phosphonate transport system, permease component.	0.421
AFY20362.1	rep1	PputUW4_03167	PputUW4_03168	Hypothetical protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.	[L] COG0210 Superfamily I DNA and RNA helicases.	0.855
phnC	AFY20362.1	PputUW4_03164	PputUW4_03167	Phosphonate-transporting ATPase; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	Hypothetical protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.	0.410
phnC	phnD	PputUW4_03164	PputUW4_03163	Phosphonate-transporting ATPase; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	Phosphonate-binding periplasmic protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.	0.996
phnC	phnE1	PputUW4_03164	PputUW4_03165	Phosphonate-transporting ATPase; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	[P] COG3639 ABC-type phosphate/phosphonate transport system, permease component.	0.993
phnC	phnE2	PputUW4_03164	PputUW4_03166	Phosphonate-transporting ATPase; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	[P] COG3639 ABC-type phosphate/phosphonate transport system, permease component.	0.992
phnC	rep1	PputUW4_03164	PputUW4_03168	Phosphonate-transporting ATPase; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	[L] COG0210 Superfamily I DNA and RNA helicases.	0.413
phnD	AFY20362.1	PputUW4_03163	PputUW4_03167	Phosphonate-binding periplasmic protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.	Hypothetical protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.	0.410
phnD	phnC	PputUW4_03163	PputUW4_03164	Phosphonate-binding periplasmic protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.	Phosphonate-transporting ATPase; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.	0.996
phnD	phnE1	PputUW4_03163	PputUW4_03165	Phosphonate-binding periplasmic protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.	[P] COG3639 ABC-type phosphate/phosphonate transport system, permease component.	0.991
phnD	phnE2	PputUW4_03163	PputUW4_03166	Phosphonate-binding periplasmic protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.	[P] COG3639 ABC-type phosphate/phosphonate transport system, permease component.	0.991
phnD	rep1	PputUW4_03163	PputUW4_03168	Phosphonate-binding periplasmic protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.	[L] COG0210 Superfamily I DNA and RNA helicases.	0.410
phnE1	AFY20362.1	PputUW4_03165	PputUW4_03167	[P] COG3639 ABC-type phosphate/phosphonate transport system, permease component.	Hypothetical protein; [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family.	0.421