STRINGSTRING
AFY20446.1 AFY20446.1 AFY20445.1 AFY20445.1 AFY18494.1 AFY18494.1 comL comL yaeT yaeT yfgL yfgL osmC osmC AFY20444.1 AFY20444.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY20446.1SmpA/OmlA domain-containing protein; [J] COG2913 Small protein A (tmRNA-binding). (116 aa)    
Predicted Functional Partners:
AFY20445.1
Hypothetical protein.
       0.748
AFY18494.1
NlpB/DapX lipoprotein.
   
 
 0.716
comL
Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.687
yaeT
Outer membrane protein assembly complex,YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.665
yfgL
Outer membrane assembly lipoprotein YfgL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.583
osmC
Peroxiredoxin; [O] COG1764 Predicted redox protein, regulator of disulfide bond formation.
   
  
 0.435
AFY20444.1
Hypothetical protein.
       0.421
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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