STRINGSTRING
AFY20465.1 AFY20465.1 dapA3 dapA3 AFY20482.1 AFY20482.1 AFY20483.1 AFY20483.1 AFY20488.1 AFY20488.1 gspG1 gspG1 AFY20484.1 AFY20484.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY20465.1Hypothetical protein. (124 aa)    
Predicted Functional Partners:
dapA3
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.599
AFY20482.1
Hypothetical protein.
  
     0.460
AFY20483.1
Fimbrial assembly protein.
  
     0.453
AFY20488.1
[E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
  
     0.415
gspG1
[NU] COG2165 Type II secretory pathway, pseudopilin PulG.
  
     0.408
AFY20484.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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