STRINGSTRING
pldA pldA AFY20471.1 AFY20471.1 AFY20472.1 AFY20472.1 vgrG3 vgrG3 AFY19126.1 AFY19126.1 AFY20524.1 AFY20524.1 AFY20273.1 AFY20273.1 iscU iscU AFY20475.1 AFY20475.1 AFY19511.1 AFY19511.1 AFY20274.1 AFY20274.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pldAPhospholipase D/transphosphatidylase; [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes. (634 aa)    
Predicted Functional Partners:
AFY20471.1
Lipoprotein; [R] COG0790 FOG: TPR repeat, SEL1 subfamily.
 
   
 0.870
AFY20472.1
Lipoprotein; [R] COG0790 FOG: TPR repeat, SEL1 subfamily.
 
   
 0.843
vgrG3
Type VI secretion system Vgr family protein; [S] COG3501 Uncharacterized protein conserved in bacteria.
  
  
 0.786
AFY19126.1
[O] COG2020 Putative protein-S-isoprenylcysteine methyltransferase.
  
    0.561
AFY20524.1
[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
  
 0.486
AFY20273.1
Hypothetical protein.
 
      0.462
iscU
FeS cluster assembly scaffold protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
 
 0.453
AFY20475.1
Hypothetical protein.
       0.449
AFY19511.1
[S] COG1289 Predicted membrane protein.
 
     0.434
AFY20274.1
PAAR repeat-containing protein; [S] COG4104 Uncharacterized conserved protein.
  
     0.433
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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