STRINGSTRING
AFY20507.1 AFY20507.1 AFY19542.1 AFY19542.1 AFY19401.1 AFY19401.1 AFY19262.1 AFY19262.1 AFY19186.1 AFY19186.1 AFY18736.1 AFY18736.1 AFY18518.1 AFY18518.1 AFY19180.1 AFY19180.1 AFY18737.1 AFY18737.1 AFY19141.1 AFY19141.1 AFY19678.1 AFY19678.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY20507.1Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains. (934 aa)    
Predicted Functional Partners:
AFY19542.1
Fatty acid hydroxylase.
  
     0.625
AFY19401.1
Hypothetical protein.
  
     0.502
AFY19262.1
Hypothetical protein.
  
     0.493
AFY19186.1
Lipopolysaccharide biosynthesis; [M] COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
     0.479
AFY18736.1
Hypothetical protein; [M] COG0438 Glycosyltransferase.
  
  
 0.476
AFY18518.1
[GEPR] COG0477 Permeases of the major facilitator superfamily.
  
     0.474
AFY19180.1
Polysaccharide biosynthesis protein; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.471
AFY18737.1
Hypothetical protein; [M] COG0438 Glycosyltransferase.
  
  
 0.466
AFY19141.1
Hypothetical protein.
  
   
 0.466
AFY19678.1
Hypothetical protein.
  
     0.455
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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