AFY20508.1 protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AFY20508.1

Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains. (494 aa)

Predicted Functional Partners:

invB

0.700

prgH

0.691

prgJ

0.624

invE

0.613

AFY20509.1

0.597

iagB

0.471

AFY22384.1

0.457

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY20508.1	AFY20509.1	PputUW4_03313	PputUW4_03314	Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains.	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.	0.597
AFY20508.1	AFY22384.1	PputUW4_03313	PputUW4_05194	Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains.	Metal dependent phosphohydrolase.	0.457
AFY20508.1	iagB	PputUW4_03313	PputUW4_03618	Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains.	Cell invasion protein; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).	0.471
AFY20508.1	invB	PputUW4_03313	PputUW4_03633	Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains.	Invasion protein.	0.700
AFY20508.1	invE	PputUW4_03313	PputUW4_03635	Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains.	Invasion protein.	0.613
AFY20508.1	prgH	PputUW4_03313	PputUW4_03617	Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains.	Type III secretion system needle complex protein.	0.691
AFY20508.1	prgJ	PputUW4_03313	PputUW4_03615	Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains.	Type III secretion system needle complex protein.	0.624
AFY20509.1	AFY20508.1	PputUW4_03314	PputUW4_03313	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.	Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains.	0.597
AFY22384.1	AFY20508.1	PputUW4_05194	PputUW4_03313	Metal dependent phosphohydrolase.	Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains.	0.457
iagB	AFY20508.1	PputUW4_03618	PputUW4_03313	Cell invasion protein; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).	Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains.	0.471
iagB	invB	PputUW4_03618	PputUW4_03633	Cell invasion protein; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).	Invasion protein.	0.764
iagB	invE	PputUW4_03618	PputUW4_03635	Cell invasion protein; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).	Invasion protein.	0.477
iagB	prgH	PputUW4_03618	PputUW4_03617	Cell invasion protein; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).	Type III secretion system needle complex protein.	0.715
iagB	prgJ	PputUW4_03618	PputUW4_03615	Cell invasion protein; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).	Type III secretion system needle complex protein.	0.819
invB	AFY20508.1	PputUW4_03633	PputUW4_03313	Invasion protein.	Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains.	0.700
invB	iagB	PputUW4_03633	PputUW4_03618	Invasion protein.	Cell invasion protein; [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).	0.764
invB	invE	PputUW4_03633	PputUW4_03635	Invasion protein.	Invasion protein.	0.869
invB	prgH	PputUW4_03633	PputUW4_03617	Invasion protein.	Type III secretion system needle complex protein.	0.773
invB	prgJ	PputUW4_03633	PputUW4_03615	Invasion protein.	Type III secretion system needle complex protein.	0.898
invE	AFY20508.1	PputUW4_03635	PputUW4_03313	Invasion protein.	Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains.	0.613