AFY20509.1 protein (Pseudomonas sp. UW4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AFY20509.1

[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. (316 aa)

Predicted Functional Partners:

AFY20508.1

0.597

AFY21271.1

0.517

AFY19633.1

0.499

AFY21131.1

0.452

AFY19212.1

0.410

AFY18620.1

0.409

AFY20201.1

0.407

AFY20289.1

0.402

Your Current Organism:

Pseudomonas sp. UW4

NCBI taxonomy Id: 1207075
Other names: P. sp. UW4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY18620.1	AFY20509.1	PputUW4_01414	PputUW4_03314	Hypothetical protein; [R] COG2388 Predicted acetyltransferase.	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.	0.409
AFY19212.1	AFY19633.1	PputUW4_02008	PputUW4_02436	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.462
AFY19212.1	AFY20509.1	PputUW4_02008	PputUW4_03314	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.	0.410
AFY19212.1	AFY21271.1	PputUW4_02008	PputUW4_04079	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	[T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	0.610
AFY19633.1	AFY19212.1	PputUW4_02436	PputUW4_02008	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.462
AFY19633.1	AFY20509.1	PputUW4_02436	PputUW4_03314	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.	0.499
AFY19633.1	AFY21131.1	PputUW4_02436	PputUW4_03939	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.583
AFY19633.1	AFY21271.1	PputUW4_02436	PputUW4_04079	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	[T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	0.680
AFY20201.1	AFY20289.1	PputUW4_03006	PputUW4_03094	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.523
AFY20201.1	AFY20509.1	PputUW4_03006	PputUW4_03314	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.	0.407
AFY20201.1	AFY21271.1	PputUW4_03006	PputUW4_04079	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	[T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	0.716
AFY20289.1	AFY20201.1	PputUW4_03094	PputUW4_03006	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.523
AFY20289.1	AFY20509.1	PputUW4_03094	PputUW4_03314	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.	0.402
AFY20289.1	AFY21131.1	PputUW4_03094	PputUW4_03939	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.530
AFY20289.1	AFY21271.1	PputUW4_03094	PputUW4_04079	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	[T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.	0.496
AFY20508.1	AFY20509.1	PputUW4_03313	PputUW4_03314	Transcriptional regulator; [K] COG3710 DNA-binding winged-HTH domains.	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.	0.597
AFY20509.1	AFY18620.1	PputUW4_03314	PputUW4_01414	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.	Hypothetical protein; [R] COG2388 Predicted acetyltransferase.	0.409
AFY20509.1	AFY19212.1	PputUW4_03314	PputUW4_02008	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.410
AFY20509.1	AFY19633.1	PputUW4_03314	PputUW4_02436	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.499
AFY20509.1	AFY20201.1	PputUW4_03314	PputUW4_03006	[K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.	AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins.	0.407