Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY20542.1 | AFY20543.1 | PputUW4_03347 | PputUW4_03348 | AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins. | Phenylacetaldoxime dehydratase. | 0.686 |
AFY20542.1 | AFY20544.1 | PputUW4_03347 | PputUW4_03349 | AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins. | [C] COG4313 Protein involved in meta-pathway of phenol degradation. | 0.571 |
AFY20543.1 | AFY20542.1 | PputUW4_03348 | PputUW4_03347 | Phenylacetaldoxime dehydratase. | AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins. | 0.686 |
AFY20543.1 | AFY20544.1 | PputUW4_03348 | PputUW4_03349 | Phenylacetaldoxime dehydratase. | [C] COG4313 Protein involved in meta-pathway of phenol degradation. | 0.752 |
AFY20543.1 | AFY20545.1 | PputUW4_03348 | PputUW4_03350 | Phenylacetaldoxime dehydratase. | Amidase; [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; Belongs to the amidase family. | 0.607 |
AFY20544.1 | AFY20542.1 | PputUW4_03349 | PputUW4_03347 | [C] COG4313 Protein involved in meta-pathway of phenol degradation. | AraC family transcriptional regulator; [K] COG2207 AraC-type DNA-binding domain-containing proteins. | 0.571 |
AFY20544.1 | AFY20543.1 | PputUW4_03349 | PputUW4_03348 | [C] COG4313 Protein involved in meta-pathway of phenol degradation. | Phenylacetaldoxime dehydratase. | 0.752 |
AFY20544.1 | AFY20545.1 | PputUW4_03349 | PputUW4_03350 | [C] COG4313 Protein involved in meta-pathway of phenol degradation. | Amidase; [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; Belongs to the amidase family. | 0.509 |
AFY20545.1 | AFY20543.1 | PputUW4_03350 | PputUW4_03348 | Amidase; [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; Belongs to the amidase family. | Phenylacetaldoxime dehydratase. | 0.607 |
AFY20545.1 | AFY20544.1 | PputUW4_03350 | PputUW4_03349 | Amidase; [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; Belongs to the amidase family. | [C] COG4313 Protein involved in meta-pathway of phenol degradation. | 0.509 |