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rbsA rbsA rbsB rbsB rbsC rbsC rbsD rbsD AFY18516.1 AFY18516.1 AFY20592.1 AFY20592.1 rbsK rbsK AFY18514.1 AFY18514.1 AFY19551.1 AFY19551.1 AFY17803.1 AFY17803.1 AFY17802.1 AFY17802.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
rbsARibose ABC transporter ATP-binding protein; [G] COG1129 ABC-type sugar transport system, ATPase component. (517 aa)    
Predicted Functional Partners:
rbsB
Ribose ABC transporter periplasmic protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.997
rbsC
[G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 0.996
rbsD
D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.958
AFY18516.1
L-arabinose transporter permease protein; [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 0.938
AFY20592.1
[K] COG1609 Transcriptional regulators.
 
  
 0.908
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.878
AFY18514.1
L-arabinose ABC transporter substrate-binding periplasmic protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.730
AFY19551.1
Periplasmic binding protein/LacI transcriptional regulator; [G] COG1879 ABC-type sugar transport system, periplasmic component.
  
 
 0.693
AFY17803.1
Inner-membrane translocator; [R] COG4603 ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.637
AFY17802.1
Inner-membrane translocator; [R] COG1079 Uncharacterized ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
     0.623
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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