Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFY19320.1 | AFY19321.1 | PputUW4_02118 | PputUW4_02119 | [V] COG0577 ABC-type antimicrobial peptide transport system, permease component. | [V] COG0577 ABC-type antimicrobial peptide transport system, permease component. | 0.832 |
| AFY19320.1 | lolD | PputUW4_02118 | PputUW4_03503 | [V] COG0577 ABC-type antimicrobial peptide transport system, permease component. | Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.798 |
| AFY19321.1 | AFY19320.1 | PputUW4_02119 | PputUW4_02118 | [V] COG0577 ABC-type antimicrobial peptide transport system, permease component. | [V] COG0577 ABC-type antimicrobial peptide transport system, permease component. | 0.832 |
| AFY19321.1 | lolD | PputUW4_02119 | PputUW4_03503 | [V] COG0577 ABC-type antimicrobial peptide transport system, permease component. | Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.874 |
| AFY20419.1 | lolA | PputUW4_03224 | PputUW4_01831 | ABC transporter permease; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component. | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.621 |
| AFY20419.1 | lolD | PputUW4_03224 | PputUW4_03503 | ABC transporter permease; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component. | Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.661 |
| AFY22028.1 | lolD | PputUW4_04838 | PputUW4_03503 | ABC transporter permease; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component. | Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.652 |
| ksgA | lolD | PputUW4_04938 | PputUW4_03503 | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.652 |
| ksgA | mcbF | PputUW4_04938 | PputUW4_02324 | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Protein McbF; [V] COG1131 ABC-type multidrug transport system, ATPase component. | 0.484 |
| ksgA | rpsK | PputUW4_04938 | PputUW4_04861 | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.900 |
| lolA | AFY20419.1 | PputUW4_01831 | PputUW4_03224 | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | ABC transporter permease; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component. | 0.621 |
| lolA | lolCE1 | PputUW4_01831 | PputUW4_03502 | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | LolC/E family lipoprotein releasing system, transmembrane protein; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component. | 0.833 |
| lolA | lolCE2 | PputUW4_01831 | PputUW4_03504 | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | LolC/E family lipoprotein releasing system, transmembrane protein; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component. | 0.844 |
| lolA | lolD | PputUW4_01831 | PputUW4_03503 | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.685 |
| lolCE1 | lolA | PputUW4_03502 | PputUW4_01831 | LolC/E family lipoprotein releasing system, transmembrane protein; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component. | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.833 |
| lolCE1 | lolCE2 | PputUW4_03502 | PputUW4_03504 | LolC/E family lipoprotein releasing system, transmembrane protein; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component. | LolC/E family lipoprotein releasing system, transmembrane protein; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component. | 0.958 |
| lolCE1 | lolD | PputUW4_03502 | PputUW4_03503 | LolC/E family lipoprotein releasing system, transmembrane protein; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component. | Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.980 |
| lolCE2 | lolA | PputUW4_03504 | PputUW4_01831 | LolC/E family lipoprotein releasing system, transmembrane protein; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component. | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.844 |
| lolCE2 | lolCE1 | PputUW4_03504 | PputUW4_03502 | LolC/E family lipoprotein releasing system, transmembrane protein; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component. | LolC/E family lipoprotein releasing system, transmembrane protein; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component. | 0.958 |
| lolCE2 | lolD | PputUW4_03504 | PputUW4_03503 | LolC/E family lipoprotein releasing system, transmembrane protein; [M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component. | Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. | 0.988 |
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