node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY17876.1 | AFY18122.1 | PputUW4_00669 | PputUW4_00915 | Hypothetical protein. | Type III restriction protein res subunit; [KL] COG1061 DNA or RNA helicases of superfamily II. | 0.867 |
AFY17876.1 | AFY20705.1 | PputUW4_00669 | PputUW4_03512 | Hypothetical protein. | helicase/SNF2 domain-containing protein; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | 0.701 |
AFY17876.1 | polA | PputUW4_00669 | PputUW4_00070 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.439 |
AFY17876.1 | rpoA | PputUW4_00669 | PputUW4_04859 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.853 |
AFY17876.1 | rpoB | PputUW4_00669 | PputUW4_04891 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.864 |
AFY17876.1 | rpoZ | PputUW4_00669 | PputUW4_05335 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.849 |
AFY18122.1 | AFY17876.1 | PputUW4_00915 | PputUW4_00669 | Type III restriction protein res subunit; [KL] COG1061 DNA or RNA helicases of superfamily II. | Hypothetical protein. | 0.867 |
AFY18122.1 | AFY20705.1 | PputUW4_00915 | PputUW4_03512 | Type III restriction protein res subunit; [KL] COG1061 DNA or RNA helicases of superfamily II. | helicase/SNF2 domain-containing protein; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | 0.640 |
AFY18122.1 | dnaN | PputUW4_00915 | PputUW4_00002 | Type III restriction protein res subunit; [KL] COG1061 DNA or RNA helicases of superfamily II. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.485 |
AFY18122.1 | polA | PputUW4_00915 | PputUW4_00070 | Type III restriction protein res subunit; [KL] COG1061 DNA or RNA helicases of superfamily II. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.955 |
AFY18122.1 | rpoA | PputUW4_00915 | PputUW4_04859 | Type III restriction protein res subunit; [KL] COG1061 DNA or RNA helicases of superfamily II. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.949 |
AFY18122.1 | rpoB | PputUW4_00915 | PputUW4_04891 | Type III restriction protein res subunit; [KL] COG1061 DNA or RNA helicases of superfamily II. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.950 |
AFY18122.1 | rpoC | PputUW4_00915 | PputUW4_04890 | Type III restriction protein res subunit; [KL] COG1061 DNA or RNA helicases of superfamily II. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.845 |
AFY18122.1 | rpoZ | PputUW4_00915 | PputUW4_05335 | Type III restriction protein res subunit; [KL] COG1061 DNA or RNA helicases of superfamily II. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.951 |
AFY20704.1 | AFY20705.1 | PputUW4_03511 | PputUW4_03512 | Hypothetical protein. | helicase/SNF2 domain-containing protein; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | 0.792 |
AFY20704.1 | mfd | PputUW4_03511 | PputUW4_03510 | Hypothetical protein. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.792 |
AFY20705.1 | AFY17876.1 | PputUW4_03512 | PputUW4_00669 | helicase/SNF2 domain-containing protein; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | Hypothetical protein. | 0.701 |
AFY20705.1 | AFY18122.1 | PputUW4_03512 | PputUW4_00915 | helicase/SNF2 domain-containing protein; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | Type III restriction protein res subunit; [KL] COG1061 DNA or RNA helicases of superfamily II. | 0.640 |
AFY20705.1 | AFY20704.1 | PputUW4_03512 | PputUW4_03511 | helicase/SNF2 domain-containing protein; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | Hypothetical protein. | 0.792 |
AFY20705.1 | dnaN | PputUW4_03512 | PputUW4_00002 | helicase/SNF2 domain-containing protein; [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.721 |