Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY18037.1 | AFY21253.1 | PputUW4_00830 | PputUW4_04061 | YebG family protein; [S] COG3141 Uncharacterized protein conserved in bacteria. | Hypothetical protein. | 0.715 |
AFY18037.1 | AFY21279.1 | PputUW4_00830 | PputUW4_04087 | YebG family protein; [S] COG3141 Uncharacterized protein conserved in bacteria. | Hypothetical protein. | 0.694 |
AFY18037.1 | lexA2 | PputUW4_00830 | PputUW4_03516 | YebG family protein; [S] COG3141 Uncharacterized protein conserved in bacteria. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.618 |
AFY18037.1 | recN | PputUW4_00830 | PputUW4_00688 | YebG family protein; [S] COG3141 Uncharacterized protein conserved in bacteria. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.543 |
AFY18037.1 | sulA | PputUW4_00830 | PputUW4_03517 | YebG family protein; [S] COG3141 Uncharacterized protein conserved in bacteria. | SOS cell division inhibitor SulA; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. | 0.823 |
AFY21253.1 | AFY18037.1 | PputUW4_04061 | PputUW4_00830 | Hypothetical protein. | YebG family protein; [S] COG3141 Uncharacterized protein conserved in bacteria. | 0.715 |
AFY21253.1 | AFY21279.1 | PputUW4_04061 | PputUW4_04087 | Hypothetical protein. | Hypothetical protein. | 0.774 |
AFY21253.1 | AFY22121.1 | PputUW4_04061 | PputUW4_04931 | Hypothetical protein. | Hypothetical protein. | 0.420 |
AFY21253.1 | damX | PputUW4_04061 | PputUW4_00351 | Hypothetical protein. | Sporulation domain-containing protein; [U] COG3267 Type II secretory pathway, component ExeA (predicted ATPase). | 0.437 |
AFY21253.1 | sulA | PputUW4_04061 | PputUW4_03517 | Hypothetical protein. | SOS cell division inhibitor SulA; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. | 0.737 |
AFY21279.1 | AFY18037.1 | PputUW4_04087 | PputUW4_00830 | Hypothetical protein. | YebG family protein; [S] COG3141 Uncharacterized protein conserved in bacteria. | 0.694 |
AFY21279.1 | AFY21253.1 | PputUW4_04087 | PputUW4_04061 | Hypothetical protein. | Hypothetical protein. | 0.774 |
AFY21279.1 | AFY21930.1 | PputUW4_04087 | PputUW4_04740 | Hypothetical protein. | Hypothetical protein. | 0.575 |
AFY21279.1 | AFY22121.1 | PputUW4_04087 | PputUW4_04931 | Hypothetical protein. | Hypothetical protein. | 0.599 |
AFY21279.1 | damX | PputUW4_04087 | PputUW4_00351 | Hypothetical protein. | Sporulation domain-containing protein; [U] COG3267 Type II secretory pathway, component ExeA (predicted ATPase). | 0.592 |
AFY21279.1 | phaG1 | PputUW4_04087 | PputUW4_01252 | Hypothetical protein. | (R)-3-hydroxydecanoyl-ACP:CoA transacylase; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). | 0.470 |
AFY21279.1 | sulA | PputUW4_04087 | PputUW4_03517 | Hypothetical protein. | SOS cell division inhibitor SulA; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. | 0.759 |
AFY21930.1 | AFY21279.1 | PputUW4_04740 | PputUW4_04087 | Hypothetical protein. | Hypothetical protein. | 0.575 |
AFY21930.1 | AFY22121.1 | PputUW4_04740 | PputUW4_04931 | Hypothetical protein. | Hypothetical protein. | 0.727 |
AFY21930.1 | damX | PputUW4_04740 | PputUW4_00351 | Hypothetical protein. | Sporulation domain-containing protein; [U] COG3267 Type II secretory pathway, component ExeA (predicted ATPase). | 0.728 |
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