Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY19106.1 | AFY20724.1 | PputUW4_01901 | PputUW4_03531 | MatE efflux family protein; [V] COG0534 Na+-driven multidrug efflux pump. | [V] COG0534 Na+-driven multidrug efflux pump. | 0.410 |
AFY19106.1 | rpsA | PputUW4_01901 | PputUW4_01364 | MatE efflux family protein; [V] COG0534 Na+-driven multidrug efflux pump. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.508 |
AFY20724.1 | AFY19106.1 | PputUW4_03531 | PputUW4_01901 | [V] COG0534 Na+-driven multidrug efflux pump. | MatE efflux family protein; [V] COG0534 Na+-driven multidrug efflux pump. | 0.410 |
AFY20724.1 | pdxB | PputUW4_03531 | PputUW4_03530 | [V] COG0534 Na+-driven multidrug efflux pump. | Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | 0.435 |
AFY20724.1 | rpsA | PputUW4_03531 | PputUW4_01364 | [V] COG0534 Na+-driven multidrug efflux pump. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.508 |
pdxB | AFY20724.1 | PputUW4_03530 | PputUW4_03531 | Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | [V] COG0534 Na+-driven multidrug efflux pump. | 0.435 |
rpsA | AFY19106.1 | PputUW4_01364 | PputUW4_01901 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | MatE efflux family protein; [V] COG0534 Na+-driven multidrug efflux pump. | 0.508 |
rpsA | AFY20724.1 | PputUW4_01364 | PputUW4_03531 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | [V] COG0534 Na+-driven multidrug efflux pump. | 0.508 |