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ppkB ppkB nasA nasA AFY17771.1 AFY17771.1 fmt fmt nasT nasT rsmB rsmB bkdA2 bkdA2 nasS nasS AFY21573.1 AFY21573.1 rsgA rsgA soxA soxA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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[Homology]
Score
ppkB[RTKL] COG0515 Serine/threonine protein kinase. (555 aa)    
Predicted Functional Partners:
nasA
[P] COG2223 Nitrate/nitrite transporter.
 
  
 0.932
AFY17771.1
Hypothetical protein.
  
 
 0.875
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
 0.869
nasT
Response regulator, AmiR/NasR family; [T] COG3707 Response regulator with putative antiterminator output domain.
 
  
 0.836
rsmB
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.826
bkdA2
2-oxoisovalerate dehydrogenase beta subunit; [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit.
   
 0.816
nasS
Nitrate-binding protein NasS; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
  
 0.806
AFY21573.1
Lipopolysaccharide kinase.
 
 
 0.800
rsgA
Ribosome-associated GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
 
  
 0.799
soxA
Sarcosine oxidase, alpha subunit; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
  
 0.794
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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