STRINGSTRING
ompF ompF tolB tolB ompH ompH sigX sigX AFY20840.1 AFY20840.1 scrY scrY oprB1 oprB1 oprB2 oprB2 lptD lptD ccoO1 ccoO1 ccoO2 ccoO2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompF[M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. (343 aa)    
Predicted Functional Partners:
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.786
ompH
[M] COG2825 Outer membrane protein.
 
 
 0.679
sigX
[K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.667
AFY20840.1
TM helix repeat-containing protein; [M] COG0668 Small-conductance mechanosensitive channel.
 
   
 0.665
scrY
[G] COG4580 Maltoporin (phage lambda and maltose receptor).
     
 0.628
oprB1
Porin B; [M] COG3659 Carbohydrate-selective porin.
     
 0.627
oprB2
[M] COG3659 Carbohydrate-selective porin.
     
 0.627
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.607
ccoO1
[C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
  
 
 0.603
ccoO2
[C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
  
 
 0.603
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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