STRINGSTRING
AFY20914.1 AFY20914.1 AFY18686.1 AFY18686.1 AFY21930.1 AFY21930.1 AFY19352.1 AFY19352.1 AFY19738.1 AFY19738.1 AFY21615.1 AFY21615.1 AFY21794.1 AFY21794.1 phaG1 phaG1 AFY21796.1 AFY21796.1 AFY21795.1 AFY21795.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY20914.1Hypothetical protein; [M] COG3248 Nucleoside-binding outer membrane protein. (261 aa)    
Predicted Functional Partners:
AFY18686.1
Periplasmic binding protein.
  
     0.621
AFY21930.1
Hypothetical protein.
  
     0.524
AFY19352.1
MutT/NUDIX family hydrolase; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
  
     0.514
AFY19738.1
UvrD/REP helicase; [L] COG0210 Superfamily I DNA and RNA helicases.
  
    0.458
AFY21615.1
Hypothetical protein.
  
     0.448
AFY21794.1
Hypothetical protein.
  
     0.448
phaG1
(R)-3-hydroxydecanoyl-ACP:CoA transacylase; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.444
AFY21796.1
Hypothetical protein.
  
     0.436
AFY21795.1
Hypothetical protein.
  
     0.428
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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