STRINGSTRING
AFY20949.1 AFY20949.1 AFY20948.1 AFY20948.1 AFY17858.1 AFY17858.1 algX algX algJ algJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY20949.1Hypothetical protein. (107 aa)    
Predicted Functional Partners:
AFY20948.1
DNA recombination protein; [S] COG1322 Uncharacterized protein conserved in bacteria.
       0.653
AFY17858.1
ATPase central domain-containing protein; [O] COG0464 ATPases of the AAA+ class.
   
 0.581
algX
Alginate biosynthesis protein AlgX.
  
 
 0.404
algJ
Alginate biosynthesis protein AlgJ.
  
 
 0.404
Your Current Organism:
Pseudomonas sp. UW4
NCBI taxonomy Id: 1207075
Other names: P. sp. UW4
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