Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY20954.1 | AFY20955.1 | PputUW4_03762 | PputUW4_03763 | [O] COG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family. | Hypothetical protein. | 0.615 |
AFY20954.1 | AFY20956.1 | PputUW4_03762 | PputUW4_03764 | [O] COG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family. | [GEPR] COG0477 Permeases of the major facilitator superfamily. | 0.627 |
AFY20954.1 | AFY20957.1 | PputUW4_03762 | PputUW4_03765 | [O] COG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family. | [K] COG1846 Transcriptional regulators. | 0.534 |
AFY20954.1 | cobS | PputUW4_03762 | PputUW4_03766 | [O] COG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family. | Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.418 |
AFY20955.1 | AFY20954.1 | PputUW4_03763 | PputUW4_03762 | Hypothetical protein. | [O] COG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family. | 0.615 |
AFY20955.1 | AFY20956.1 | PputUW4_03763 | PputUW4_03764 | Hypothetical protein. | [GEPR] COG0477 Permeases of the major facilitator superfamily. | 0.807 |
AFY20955.1 | AFY20957.1 | PputUW4_03763 | PputUW4_03765 | Hypothetical protein. | [K] COG1846 Transcriptional regulators. | 0.645 |
AFY20955.1 | cobC1 | PputUW4_03763 | PputUW4_03767 | Hypothetical protein. | [G] COG0406 Fructose-2,6-bisphosphatase. | 0.416 |
AFY20955.1 | cobS | PputUW4_03763 | PputUW4_03766 | Hypothetical protein. | Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.416 |
AFY20955.1 | cobT | PputUW4_03763 | PputUW4_03768 | Hypothetical protein. | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). | 0.416 |
AFY20955.1 | cobU | PputUW4_03763 | PputUW4_03769 | Hypothetical protein. | Adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. | 0.416 |
AFY20956.1 | AFY20954.1 | PputUW4_03764 | PputUW4_03762 | [GEPR] COG0477 Permeases of the major facilitator superfamily. | [O] COG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family. | 0.627 |
AFY20956.1 | AFY20955.1 | PputUW4_03764 | PputUW4_03763 | [GEPR] COG0477 Permeases of the major facilitator superfamily. | Hypothetical protein. | 0.807 |
AFY20956.1 | AFY20957.1 | PputUW4_03764 | PputUW4_03765 | [GEPR] COG0477 Permeases of the major facilitator superfamily. | [K] COG1846 Transcriptional regulators. | 0.707 |
AFY20956.1 | cobC1 | PputUW4_03764 | PputUW4_03767 | [GEPR] COG0477 Permeases of the major facilitator superfamily. | [G] COG0406 Fructose-2,6-bisphosphatase. | 0.472 |
AFY20956.1 | cobS | PputUW4_03764 | PputUW4_03766 | [GEPR] COG0477 Permeases of the major facilitator superfamily. | Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.472 |
AFY20956.1 | cobT | PputUW4_03764 | PputUW4_03768 | [GEPR] COG0477 Permeases of the major facilitator superfamily. | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). | 0.472 |
AFY20956.1 | cobU | PputUW4_03764 | PputUW4_03769 | [GEPR] COG0477 Permeases of the major facilitator superfamily. | Adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. | 0.472 |
AFY20957.1 | AFY20954.1 | PputUW4_03765 | PputUW4_03762 | [K] COG1846 Transcriptional regulators. | [O] COG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family. | 0.534 |
AFY20957.1 | AFY20955.1 | PputUW4_03765 | PputUW4_03763 | [K] COG1846 Transcriptional regulators. | Hypothetical protein. | 0.645 |
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